RegulonDB RegulonDB 10.9: Regulon Form
   
   


IHF,RtcR regulon in Escherichia coli K-12 genome


TRANSCRIPTION FACTOR: Info
Name:
RtcR      Tractordb tool
Connectivity class Local Regulator
Synonym(s): DNA-binding transcriptional activator RtcR, YhgB
Gene name(s): rtcR
Functional conformation(s): RtcR
Coregulator(s): IHF, RtcR
Summary: TF Summary ...[more]
TRANSCRIPTION FACTOR: Info
Name:
IHF Weight Matrix      Tractordb tool
Connectivity class Global Regulator
Synonym(s): DNA-binding transcriptional dual regulator IHF
Gene name(s): ihfB, ihfA
Functional conformation(s): IHF
Coregulator(s): AcrR, AdiY, ArcA, ArgR, AtoC, BasR, BolA, BtsR, CRP, Cbl, CpxR, Cra, CsgD, CysB, DksA, DksA-ppGpp, EnvY, FNR, FadR, FhlA, Fis, FlhDC, FliZ, Fur, GadE, GlcC, GlpR, GlrR, H-NS, HU, HdfR, HipAB, HipB, IHF, IclR, IscR, LrhA, Lrp, MarA, MatA, MlrA, MntR, ModE, MprA, MqsA, Nac, NagC, NanR, NarL, NarP, NorR, NsrR, NtrC, OmpR, OxyR, PaaX, PdhR, PepA, PhoB, PspF, PurR, QseB, RcdA, RcsAB, Rob, RstA, RtcR, RutR, SlyA, SoxR, SoxS, SutR, TdcA, TdcR, TrpR, TyrR, UlaR, UvrY, YeiL, YiaJ, YjjQ, ppGpp
Summary: TF Summary ...[more]

REGULATION EXERTED BY IHF,RtcR Info M3D | Colombos
KNOWN BINDING SITES (The central relative position is relative to the promoter +1)    
IHF activator RtcR activator    
Transcription Factor
Regulated
Binding Sites
Evidence
References
Functional conformation
Function
Promoter
Gene(s)
LeftPos
RigthPos
Central Rel-Pos
Sequence
IHF activator rtcBp rtcA , rtcB 3558163 3558175 -62.0 ataatcttttTTAAAACAATGAATtaaaaaatta   [1]
IHF activator rtcBp rtcA , rtcB 3558153 3558165 -52.0 ttaaaacaatGAATTAAAAAATTAagctgcttat   [1]
RtcR activator rtcBp rtcA , rtcB

Reference(s): [1] Genschik P., et al., 1998



Reference(s)    

 [1] Genschik P., Drabikowski K., Filipowicz W., 1998, Characterization of the Escherichia coli RNA 3'-terminal phosphate cyclase and its sigma54-regulated operon., J Biol Chem 273(39):25516-26


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