RegulonDB RegulonDB 10.9: Regulon Form
   
   


CRP,IHF,YiaJ regulon in Escherichia coli K-12 genome


TRANSCRIPTION FACTOR: Info
Name:
CRP Weight Matrix      Tractordb tool
Connectivity class Global Regulator
Sensing Class Using internal synthesized signals
Synonym(s): Cap, Csm, DNA-binding transcriptional dual regulator CRP, GurB
Gene name(s): crp
Functional conformation(s): CRP-cAMP , CRP
Coregulator(s): AcrR, AdiY, AgaR, AraC, ArcA, ArgP, ArgR, AscG, BasR, BolA, BtsR, CRP, CRP-Sxy, CaiF, ChbR, ComR, CpxR, Cra, CreB, CsgD, CspA, CsqR, CusR, CytR, DcuR, DeoR, DgoR, DksA-ppGpp, DnaA, DpiA, DsdC, EbgR, EnvY, EvgA, ExuR, FNR, FadR, FeaR, FhlA, Fis, FlhDC, FliZ, FucR, Fur, GadE, GadE-RcsB, GadW, GadX, GalR, GalS, GatR, GcvA, GlaR, GlcC, GlpR, GlrR, GntR, GutM, H-NS, HU, HdfR, HipB, HprR, HyfR, HypT, IHF, IclR, IdnR, LacI, LeuO, LexA, LrhA, Lrp, LsrR, MalI, MalT, MarA, MarR, MatA, McbR, MelR, MetJ, MhpR, Mlc, MlrA, ModE, MprA, MqsA, MurR, Nac, NadR, NagC, NanR, NarL, NarP, NrdR, NsrR, NtrC, OmpR, OxyR, PaaX, PdhR, PhoB, PhoP, PrpR, PurR, PuuR, QseB, RbsR, RcdA, RcsAB, RcsB, RcsB-BglJ, RhaR, RhaS, Rob, RstA, SdiA, SlyA, SoxR, SoxS, SrlR, StpA, TdcA, TdcR, TorR, TreR, UhpA, UidR, UlaR, UvrY, UxuR, XylR, YdeO, YiaJ, YjjQ, ZraR, ppGpp
Summary: TF Summary ...[more]
TRANSCRIPTION FACTOR: Info
Name:
YiaJ      Tractordb tool
Connectivity class Local Regulator
Synonym(s): DNA-binding transcriptional repressor PlaR, PlaR
Gene name(s): plaR
Functional conformation(s): YiaJ
Coregulator(s): CRP, IHF, YiaJ
Summary: TF Summary ...[more]
TRANSCRIPTION FACTOR: Info
Name:
IHF Weight Matrix      Tractordb tool
Connectivity class Global Regulator
Synonym(s): DNA-binding transcriptional dual regulator IHF
Gene name(s): ihfB, ihfA
Functional conformation(s): IHF
Coregulator(s): AcrR, AdiY, ArcA, ArgR, AtoC, BasR, BolA, BtsR, CRP, Cbl, CpxR, Cra, CsgD, CysB, DksA, DksA-ppGpp, EnvY, FNR, FadR, FhlA, Fis, FlhDC, FliZ, Fur, GadE, GlcC, GlpR, GlrR, H-NS, HU, HdfR, HipAB, HipB, IHF, IclR, IscR, LrhA, Lrp, MarA, MatA, MlrA, MntR, ModE, MprA, MqsA, Nac, NagC, NanR, NarL, NarP, NorR, NsrR, NtrC, OmpR, OxyR, PaaX, PdhR, PepA, PhoB, PspF, PurR, QseB, RcdA, RcsAB, Rob, RstA, RtcR, RutR, SlyA, SoxR, SoxS, SutR, TdcA, TdcR, TrpR, TyrR, UlaR, UvrY, YeiL, YiaJ, YjjQ, ppGpp
Summary: TF Summary ...[more]

REGULATION EXERTED BY CRP,IHF,YiaJ Info M3D | Colombos
KNOWN BINDING SITES (The central relative position is relative to the promoter +1)    
CRP repressor IHF repressor YiaJ repressor    
Transcription Factor
Regulated
Binding Sites
Evidence
References
Functional conformation
Function
Promoter
Gene(s)
LeftPos
RigthPos
Central Rel-Pos
Sequence
IHF repressor plaRp plaR 3742616 3742628 -4.0 caatctgattGATGAATTTCAAAAgacataaaaa   [1]
CRP-cAMP repressor plaRp plaR 3742558 3742579 50.5 ttatctgtcgAGATCGTGAACTACGGCACACTTtgcgctacca   [1]
YiaJ repressor plaRp plaR 3742663 3742683 -55.0 aaaatttcaaTATGCGAAACTTGATTTCAAATatatcgatca   [1]
CRP activator CRP unknown IHF activator YiaJ repressor    
Transcription Factor
Regulated
Binding Sites
Evidence
References
Functional conformation
Function
Promoter
Gene(s)
LeftPos
RigthPos
Central Rel-Pos
Sequence
CRP-cAMP unknown yiaKp yiaK , yiaL , yiaM , yiaN , yiaO , lyxK , sgbH , sgbU , sgbE 3742725 3742746 62.5 aaaacaaggaAGCCTGGGATGAAAGTGACATTTgagcagttaa   [1]
CRP-cAMP activator yiaKp yiaK , yiaL , yiaM , yiaN , yiaO , lyxK , sgbH , sgbU , sgbE 3742558 3742579 -105.5 tggtagcgcaAAGTGTGCCGTAGTTCACGATCTcgacagataa   [1]
IHF activator yiaKp yiaK , yiaL , yiaM , yiaN , yiaO , lyxK , sgbH , sgbU , sgbE 3742618 3742630 -49.5 tttatgtcttTTGAAATTCATCAAtcagattgcc   [1]
YiaJ repressor yiaKp yiaK , yiaL , yiaM , yiaN , yiaO , lyxK , sgbH , sgbU , sgbE 3742663 3742683 -1.0 tgatcgatatATTTGAAATCAAGTTTCGCATAttgaaatttt   [1]

Reference(s): [1] Ibanez E., et al., 2000



Reference(s)    

 [1] Ibanez E., Campos E., Baldoma L., Aguilar J., Badia J., 2000, Regulation of expression of the yiaKLMNOPQRS operon for carbohydrate utilization in Escherichia coli: involvement of the main transcriptional factors., J Bacteriol 182(16):4617-24


RegulonDB