RegulonDB RegulonDB 10.9: Regulon Form
   
   


HipAB,HipB,IHF regulon in Escherichia coli K-12 genome


TRANSCRIPTION FACTOR: Info
Name:
HipB      Tractordb tool
Connectivity class Local Regulator
Synonym(s): antitoxin/DNA-binding transcriptional repressor HipB
Gene name(s): hipB
Functional conformation(s): HipB
Coregulator(s): ArcA, CRP, FadR, HipAB, HipB, IHF
Summary: TF Summary ...[more]
TRANSCRIPTION FACTOR: Info
Name:
IHF Weight Matrix      Tractordb tool
Connectivity class Global Regulator
Synonym(s): DNA-binding transcriptional dual regulator IHF
Gene name(s): ihfB, ihfA
Functional conformation(s): IHF
Coregulator(s): AcrR, AdiY, ArcA, ArgR, AtoC, BasR, BolA, BtsR, CRP, Cbl, CpxR, Cra, CsgD, CysB, DksA, DksA-ppGpp, EnvY, FNR, FadR, FhlA, Fis, FlhDC, FliZ, Fur, GadE, GlcC, GlpR, GlrR, H-NS, HU, HdfR, HipAB, HipB, IHF, IclR, IscR, LrhA, Lrp, MarA, MatA, MlrA, MntR, ModE, MprA, MqsA, Nac, NagC, NanR, NarL, NarP, NorR, NsrR, NtrC, OmpR, OxyR, PaaX, PdhR, PepA, PhoB, PspF, PurR, QseB, RcdA, RcsAB, Rob, RstA, RtcR, RutR, SlyA, SoxR, SoxS, SutR, TdcA, TdcR, TrpR, TyrR, UlaR, UvrY, YeiL, YiaJ, YjjQ, ppGpp
Summary: TF Summary ...[more]
TRANSCRIPTION FACTOR: Info
Name:
HipAB Weight Matrix      Tractordb tool
Connectivity class Local Regulator
Synonym(s): HipAB toxin/antitoxin complex / DNA-binding transcriptional repressor, HipBA
Gene name(s): hipB, hipA
Functional conformation(s): HipAB
Coregulator(s): HipAB, HipB, IHF
Summary: TF Summary ...[more]

REGULATION EXERTED BY HipAB,HipB,IHF Info M3D | Colombos
KNOWN BINDING SITES (The central relative position is relative to the promoter +1)    
HipAB repressor HipB repressor IHF activator    
Transcription Factor
Regulated
Binding Sites
Evidence
References
Functional conformation
Function
Promoter
Gene(s)
LeftPos
RigthPos
Central Rel-Pos
Sequence
IHF activator hipBp hipA , hipB 1592593 1592605 -117.0 ttcaaacggcGCATCAACGCCTTAtttaaatcct   [1]
HipB repressor hipBp hipA , hipB 1592463 1592482 10.5 taaaacttatAATATCCCCTTAAGCGGATAAacttgctgtg   [1]
HipB repressor hipBp hipA , hipB 1592491 1592511 -18.5 tccagattgaCTTATCCTCACTAAAGGATAAaacttataat   [1]
HipB repressor hipBp hipA , hipB 1592530 1592549 -57.5 tatcgcagcgTTTATCCCGTAGAGCGGATAAgatgtgtttc   [1]
HipB repressor hipBp hipA , hipB 1592558 1592577 -85.5 aatcctccttTTTATCCGCGATCGCGGATATcgcagcgttt   [1]
HipAB repressor hipBp hipA , hipB 1592463 1592482 10.5 taaaacttatAATATCCCCTTAAGCGGATAAacttgctgtg   [1]
HipAB repressor hipBp hipA , hipB 1592558 1592577 -85.5 aatcctccttTTTATCCGCGATCGCGGATATcgcagcgttt   [1]
HipAB repressor hipBp hipA , hipB 1592530 1592549 -57.5 tatcgcagcgTTTATCCCGTAGAGCGGATAAgatgtgtttc   [1]
HipAB repressor hipBp hipA , hipB 1592491 1592511 -18.5 tccagattgaCTTATCCTCACTAAAGGATAAaacttataat   [1]

Reference(s): [1] Black DS., et al., 1994



Reference(s)    

 [1] Black DS., Irwin B., Moyed HS., 1994, Autoregulation of hip, an operon that affects lethality due to inhibition of peptidoglycan or DNA synthesis., J Bacteriol 176(13):4081-91


RegulonDB