RegulonDB RegulonDB 10.9: Regulon Form
   
   


OmpR regulon in Escherichia coli K-12 genome


TRANSCRIPTION FACTOR: Info
Name:
OmpR Weight Matrix      Tractordb tool
Connectivity class Local Regulator
Sensing Class External-Two-component systems
Synonym(s): Cry, DNA-binding transcriptional dual regulator OmpR, Kmt, OmpB, OmpR response regulator
Gene name(s): ompR
Functional conformation(s): OmpR , OmpR-P
Coregulator(s): AcrR, ArcA, BasR, BolA, BtsR, CRP, CadC, CpxR, Cra, CsgD, EnvY, FNR, FadR, Fis, FliZ, Fur, GadE-RcsB, GadX, H-NS, HU, HdfR, IHF, LeuO, LrhA, Lrp, MarA, MatA, MlrA, MprA, MqsA, NagC, NhaR, OmpR, PhoB, PhoP, QseB, RcdA, RcsAB, Rob, RstA, SoxS, YjjQ, ppGpp

REGULATION EXERTED BY OmpR Info M3D | Colombos
KNOWN BINDING SITES (The central relative position is relative to the promoter +1)    
OmpR activator    
Transcription Factor
Regulated
Binding Sites
Evidence
References
Functional conformation
Function
Promoter
Gene(s)
LeftPos
RigthPos
Central Rel-Pos
Sequence
OmpR-P activator omrAp omrA 2976250 2976269 -70.5 aaccgacaatTTACACACCTCGTTGCATTTCccttcattcc   [1]
OmpR-P activator omrBp omrB 2976447 2976466 -71.5 aaaagagattGCAAACCTTTGGTTACACTTTgcgaaacgct   [1]
OmpR repressor    
Transcription Factor
Regulated
Binding Sites
Evidence
References
Functional conformation
Function
Promoter
Gene(s)
LeftPos
RigthPos
Central Rel-Pos
Sequence
OmpR-P repressor ecnBp ecnB 4376517 4376536 18.5 tttgctatagGCAAACATAAATAACATTACCtaaaaggaag   [2]

Reference(s): [1] Guillier M., et al., 2006
[2] Bishop RE., et al., 1998



Reference(s)    

 [1] Guillier M., Gottesman S., 2006, Remodelling of the Escherichia coli outer membrane by two small regulatory RNAs., Mol Microbiol 59(1):231-47

 [2] Bishop RE., Leskiw BK., Hodges RS., Kay CM., Weiner JH., 1998, The entericidin locus of Escherichia coli and its implications for programmed bacterial cell death., J Mol Biol 280(4):583-96


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