RegulonDB RegulonDB 10.9: Regulon Form
   
   


RcnR regulon in Escherichia coli K-12 genome


TRANSCRIPTION FACTOR: Info
Name:
RcnR      Tractordb tool
Connectivity class Local Regulator
Synonym(s): DNA-binding transcriptional repressor RcnR, YohL
Gene name(s): rcnR
Functional conformation(s): RcnR-Ni2+ , RcnR-Co2+ , RcnR
Coregulator(s): Fur, RcnR
Summary: TF Summary ...[more]

REGULATION EXERTED BY RcnR Info M3D | Colombos
KNOWN BINDING SITES (The central relative position is relative to the promoter +1)    
RcnR repressor    
Transcription Factor
Regulated
Binding Sites
Evidence
References
Functional conformation
Function
Promoter
Gene(s)
LeftPos
RigthPos
Central Rel-Pos
Sequence
RcnR repressor rcnRp rcnR 2185865 2185879 31.5 caatctgattCTACTCCCCCCCAGTAcctgatacta [BPP]
[GEA]
[1]
[2]
[3]
RcnR repressor rcnRp rcnR 2185845 2185859 51.5 ccagtacctgATACTACCCCCCAGTAgattaatagt [BPP]
[GEA]
[1]
[2]
[3]

Evidence: [BPP] Binding of purified proteins
[GEA] Gene expression analysis
Reference(s): [1] Iwig JS., et al., 2009
[2] Iwig JS., et al., 2006
[3] Koch D., et al., 2007



Reference(s)    

 [1] Iwig JS., Chivers PT., 2009, DNA recognition and wrapping by Escherichia coli RcnR., J Mol Biol 393(2):514-26

 [2] Iwig JS., Rowe JL., Chivers PT., 2006, Nickel homeostasis in Escherichia coli - the rcnR-rcnA efflux pathway and its linkage to NikR function., Mol Microbiol 62(1):252-62

 [3] Koch D., Nies DH., Grass G., 2007, The RcnRA (YohLM) system of Escherichia coli: a connection between nickel, cobalt and iron homeostasis., Biometals 20(5):759-71


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