RegulonDB RegulonDB 11.1: Regulon Form
   
   


GlrR,IHF regulon in Escherichia coli K-12 genome


TRANSCRIPTION FACTOR: Info
Name:
GlrR Weight Matrix      Tractordb tool
Connectivity class Local Regulator
Sensing Class External-Two-component systems
Synonym(s): DNA-binding transcriptional activator GlrR, GlrR response regulator, QseF, YfhA
Gene name(s): glrR
Functional conformation(s): GlrR , GlrR-phosphorylated
Coregulator(s): CRP, GlrR, IHF, NtrC, RcsB
Summary: TF Summary ...[more]
TRANSCRIPTION FACTOR: Info
Name:
IHF Weight Matrix      Tractordb tool
Connectivity class Global Regulator
Sensing Class TFs for DNA-bending
Synonym(s): DNA-binding transcriptional dual regulator IHF
Gene name(s): ihfB, ihfA
Functional conformation(s): IHF
Coregulator(s): AcrR, AdiY, ArcA, ArgR, AtoC, BasR, BolA, BtsR, CRP, Cbl, CpxR, Cra, CsgD, CysB, DksA, DksA-ppGpp, EnvY, FNR, FadR, FhlA, Fis, FlhDC, FliZ, Fur, GadE, GlcC, GlpR, GlrR, H-NS, HU, HdfR, HipAB, HipB, IHF, IclR, IscR, LrhA, Lrp, MarA, MatA, MlrA, MntR, ModE, MprA, MqsA, Nac, NagC, NanR, NarL, NarP, NorR, NsrR, NtrC, OmpR, OxyR, PaaX, PdhR, PepA, PhoB, PlaR, PspF, PurR, QseB, RcdA, RcsAB, Rob, RstA, RtcR, RutR, SlyA, SoxR, SoxS, SutR, TdcA, TdcR, TrpR, TyrR, UlaR, UvrY, YeiL, YjjQ, ppGpp
Summary: TF Summary ...[more]

REGULATION EXERTED BY GlrR,IHF Info M3D | Colombos
KNOWN BINDING SITES (The central relative position is relative to the promoter +1)    
GlrR activator IHF activator    
Transcription Factor
Regulated
Binding Sites
Evidence
References
Functional conformation
Function
Promoter
Gene(s)
LeftPos
RigthPos
Central Rel-Pos
Sequence
IHF activator glmYp1 glmY 2691503 2691515 -169.0 gcgacacttaACTCATTGATTTTaatattatct [EXP-IEP-GENE-EXPRESSION-ANALYSIS] [1]
[2]
GlrR-phosphorylated activator glmYp1 glmY 2691553 2691570 -221.5 agcttttttgTGTCTGTAAATCACGACAatgggtggtt [EXP-IEP-GENE-EXPRESSION-ANALYSIS] [2]
GlrR-phosphorylated activator glmYp1 glmY 2691520 2691537 -188.5 tggtttgccgTGTCGCTTTCTGGCGACActtaactcat [EXP-IEP-GENE-EXPRESSION-ANALYSIS] [2]
GlrR-phosphorylated activator glmYp1 glmY 2691457 2691474 -125.5 tatcttaagtTGTCTCTTTTTAGCGACAcagtggctga [EXP-IEP-GENE-EXPRESSION-ANALYSIS] [2]
IHF activator glmYp1 glmY 2691386 2691398 -52.0 agcaacgtatAATCAGTACGTTAccaaactatt [EXP-IEP-GENE-EXPRESSION-ANALYSIS] [1]

Evidence: [EXP-IEP-GENE-EXPRESSION-ANALYSIS] Gene expression analysis
Reference(s): [1] Gopel Y., et al., 2011
[2] Reichenbach B., et al., 2009



Reference(s)    

 [1] Gopel Y., Luttmann D., Heroven AK., Reichenbach B., Dersch P., Gorke B., 2011, Common and divergent features in transcriptional control of the homologous small RNAs GlmY and GlmZ in Enterobacteriaceae., Nucleic Acids Res 39(4):1294-309

 [2] Reichenbach B., Gopel Y., Gorke B., 2009, Dual control by perfectly overlapping sigma 54- and sigma 70- promoters adjusts small RNA GlmY expression to different environmental signals., Mol Microbiol 74(5):1054-70

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