RegulonDB RegulonDB 11.1: Regulon Form
   
   


CsqR regulon in Escherichia coli K-12 genome


TRANSCRIPTION FACTOR: Info
Name:
CsqR      Tractordb tool
Connectivity class Local Regulator
Synonym(s): DNA-binding transcriptional dual regulator CsqR, YihW
Gene name(s): csqR
Functional conformation(s): CsqR , CsqR-6-sulfo-D-quinovose
Coregulator(s): CRP, CsqR
Summary: TF Summary ...[more]

REGULATION EXERTED BY CsqR Info M3D | Colombos
KNOWN BINDING SITES (The central relative position is relative to the promoter +1)    
CsqR repressor    
Transcription Factor
Regulated
Binding Sites
Evidence
References
Functional conformation
Function
Promoter
Gene(s)
LeftPos
RigthPos
Central Rel-Pos
Sequence
CsqR repressor yihUp5 yihS , yihT , yihU 4073662 4073687 -11.0 caccaattgtTTAAAAAGTGACGGCTGTCAATTTTTtgacgataaa [EXP-GSELEX]
[EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
[EXP-IEP-GENE-EXPRESSION-ANALYSIS] 		[1]
CsqR repressor yihVp1 yihV , csqR 4073662 4073687 -38.0 tttatcgtcaAAAAATTGACAGCCGTCACTTTTTAAacaattggtg [EXP-IEP-GENE-EXPRESSION-ANALYSIS] [1]

Evidence: [EXP-GSELEX] high throughput Genomic SELEX-chip evidence
[EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] Binding of purified proteins
[EXP-IEP-GENE-EXPRESSION-ANALYSIS] Gene expression analysis
Reference(s): [1] Shimada T., et al., 2019



Reference(s)    

 [1] Shimada T., Yamamoto K., Nakano M., Watanabe H., Schleheck D., Ishihama A., 2019, Regulatory role of CsqR (YihW) in transcription of the genes for catabolism of the anionic sugar sulfoquinovose (SQ) in Escherichia coli K-12., Microbiology 165(1):78-89

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