RegulonDB evolutionary first Genes of Regulon
   

Summary of evolutionary conservation promoters regulated by CpxR

The evolutionary conservation of promoters is limited to Gammaproteobacteria and to sigma70 promoters. In general an promoter is conserved if, i) the position of the promoter from the gene start is conserved, or ii) the promoter sequence recognized by the sigma70 factor is conserved (p < 0.0001). To avoid redundancy, the orthologous regions were purged using the program Purge-Sequence from RSAtools. Orthologs consisted of BLAST reciprocal best hits using soft masking and Smith-Waterman alignments.


First gene Promoter name Evolutionary conservation ratio (nd) Footprint conservation
acrD acrDp 0.03
acrDp2 (nd)
aroG aroGp 0.25
bacA bacAp (nd)
bamE bamEp (nd)
cpxP cpxPp 0.46
cpxR cpxRp 0.06
cpxRp2 (nd)
cpxR cpxRp 0.06
cpxRp2 (nd)
csgB csgBp 0.06
csgBp2 (nd)
csgB csgBp 0.06
csgBp2 (nd)
csgD csgDp (nd)
csgDp1 0.51
csgDp2 0.09
csgDp3 (nd)
csgD csgDp (nd)
csgDp1 0.51
csgDp2 0.09
csgDp3 (nd)
cyaR cyaRp (nd)
cyaRp2 (nd)
cyaRp3 (nd)
cyaR cyaRp (nd)
cyaRp2 (nd)
cyaRp3 (nd)
cyaR cyaRp (nd)
cyaRp2 (nd)
cyaRp3 (nd)
degP degPp (nd)
dgcZ dgcZp 0.23
dsbC dsbCp (nd)
dsbCp2 (nd)
xerDp 0.05
xerDp2 (nd)
efeU efeUp (nd)
ftnB ftnBp (nd)
ftnBp2 (nd)
skp bamAp2 (nd)
hlpAp (nd)
ldtC ldtCp 0.08
ldtD ldtDp (nd)
marR marRp 0.79
mdtA mdtAp (nd)
motA motAp (nd)
ompC ompCp1 0.08
ompCp2 (nd)
ompCp3 (nd)
ompF ompFp (nd)
ompFp2 (nd)
ompF ompFp (nd)
ompFp2 (nd)
ppiA ppiAp1 0.09
ppiAp2 0.02
ppiAp3 0.19
ppiAp4 0.13
ppiD ppiDp1 (nd)
ppiDp2 0.03
psd psdp (nd)
rseD rpoEp1a (nd)
rpoEp1b (nd)
rpoEp2b (nd)
rpoEp4 (nd)
rseDp (nd)
rpoH rpoHp (nd)
rpoHp1 0.26
rpoHp3 (nd)
rpoHp4 0.12
rpoHp5 0.11
rpoHp6 (nd)
rpoH rpoHp (nd)
rpoHp1 0.26
rpoHp3 (nd)
rpoHp4 0.12
rpoHp5 0.11
rpoHp6 (nd)
rprA rprAp (nd)
sbmA sbmAp (nd)
slt sltp7 (nd)
spy spyp (nd)
srkA srkAp (nd)
tomB tomBp1 0.26
tsr tsrp (nd)
tsrp1 0.04
ung ungp (nd)
yccA yccAp 0.06
yebE yebEp 0.03
yidQ yidQp (nd)
yqaE yqaEp (nd)
yqaEp (nd)
yqaE yqaEp (nd)
yqaEp (nd)
yqjA yqjAp1 0.07
yqjAp2 (nd)



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