RegulonDB evolutionary first Genes of Regulon
   

Summary of evolutionary conservation promoters regulated by SoxS

The evolutionary conservation of promoters is limited to Gammaproteobacteria and to sigma70 promoters. In general an promoter is conserved if, i) the position of the promoter from the gene start is conserved, or ii) the promoter sequence recognized by the sigma70 factor is conserved (p < 0.0001). To avoid redundancy, the orthologous regions were purged using the program Purge-Sequence from RSAtools. Orthologs consisted of BLAST reciprocal best hits using soft masking and Smith-Waterman alignments.


First gene Promoter name Evolutionary conservation ratio (nd) Footprint conservation
acnA acnAp1 0.03
acnAp2 0.08
acnAp3 (nd)
ymiCp (nd)
acrA acrAp 0.24
acrZ acrZp (nd)
aldA aldAp (nd)
decR decRp 0.28
fldA fldAp (nd)
fldB fldBp 0.05
fpr fprp 0.01
fumC fumAp 0.12
fumCp (nd)
fumCp1 (nd)
inaA inaAp 0.08
marR marRp 0.79
micF micFp (nd)
micFp2 (nd)
micF micFp (nd)
micFp2 (nd)
nepI nepIp (nd)
nfo nfop (nd)
nfsB nfsBp 0.11
ompW ompWp (nd)
pgi pgip 0.06
pgip2 (nd)
pgi pgip 0.06
pgip2 (nd)
poxB hcpp (nd)
poxBp 0.13
poxBp2 (nd)
poxB hcpp (nd)
poxBp 0.13
poxBp2 (nd)
pqiA pqiAp (nd)
pqiAp1 0.06
pqiAp2 0.06
pqiAp3 (nd)
pqiA pqiAp (nd)
pqiAp1 0.06
pqiAp2 0.06
pqiAp3 (nd)
ptsG ptsGp1 (nd)
ptsGp2 (nd)
waaY rirAp 0.03
waaQp (nd)
waaYp (nd)
ribA ribAp1 0.02
ribAp2 0.14
rob robp (nd)
sodA sodAp 0.27
soxS soxSp 0.21
tolC tolCp1 (nd)
tolCp2 (nd)
tolCp3 (nd)
tolCp4 (nd)
tolC tolCp1 (nd)
tolCp2 (nd)
tolCp3 (nd)
tolCp4 (nd)
uof fldAp (nd)
uofp (nd)
ybjC ybjCp 0.20
ydbK ydbKp (nd)
ydbKp (nd)
ydbKp4 (nd)
ydbK ydbKp (nd)
ydbKp (nd)
ydbKp4 (nd)
yrbL yrbLp (nd)
zinT zinTp 0.54
zwf zwfp 0.03



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