RegulonDB evolutionary first Genes of Regulon
   

Summary of evolutionary conservation promoters regulated by CysB

The evolutionary conservation of promoters is limited to Gammaproteobacteria and to sigma70 promoters. In general an promoter is conserved if, i) the position of the promoter from the gene start is conserved, or ii) the promoter sequence recognized by the sigma70 factor is conserved (p < 0.0001). To avoid redundancy, the orthologous regions were purged using the program Purge-Sequence from RSAtools. Orthologs consisted of BLAST reciprocal best hits using soft masking and Smith-Waterman alignments.


First gene Promoter name Evolutionary conservation ratio (nd) Footprint conservation
cbl cblp 0.05
cysB cysBp 0.08
cysD cysDp 0.11
cysJ cysJp 0.09
cysK cysKp1 0.12
cysKp2 (nd)
cysP cysPp (nd)
dgcZ dgcZp 0.23
hslJ hslJp (nd)
ssuE ssuEp (nd)
tauA tauAp (nd)
tcyJ fliAp1 (nd)
fliAp2 (nd)
tcyJp (nd)
tcyP tcyPp (nd)
ybdN ybdNp 0.64
yciW yciWp (nd)
ygeH ygeHp10 (nd)
yoaC yoaCp1 (nd)



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