RegulonDB evolutionary first Genes of Regulon
   

Summary of evolutionary conservation promoters regulated by MarA

The evolutionary conservation of promoters is limited to Gammaproteobacteria and to sigma70 promoters. In general an promoter is conserved if, i) the position of the promoter from the gene start is conserved, or ii) the promoter sequence recognized by the sigma70 factor is conserved (p < 0.0001). To avoid redundancy, the orthologous regions were purged using the program Purge-Sequence from RSAtools. Orthologs consisted of BLAST reciprocal best hits using soft masking and Smith-Waterman alignments.


First gene Promoter name Evolutionary conservation ratio (nd) Footprint conservation
acnA acnAp1 0.03
acnAp2 0.08
acnAp3 (nd)
ymiCp (nd)
acrA acrAp 0.24
acrZ acrZp (nd)
aldA aldAp (nd)
decR decRp 0.28
fpr fprp 0.01
fumC fumAp 0.12
fumCp (nd)
fumCp1 (nd)
hdeA hdeAp 0.33
hdeAp2 (nd)
hdeA hdeAp 0.33
hdeAp2 (nd)
inaA inaAp 0.08
lacZ lacZp1 0.13
lacZp2 (nd)
lacZp3 (nd)
lacZp4 (nd)
marR marRp 0.79
micF micFp (nd)
micFp2 (nd)
micF micFp (nd)
micFp2 (nd)
mlaF mlaFp1 (nd)
mlaFp2 (nd)
mlaFp3 (nd)
nfo nfop (nd)
nfsB nfsBp 0.11
poxB hcpp (nd)
poxBp 0.13
poxBp2 (nd)
poxB hcpp (nd)
poxBp 0.13
poxBp2 (nd)
pqiA pqiAp (nd)
pqiAp1 0.06
pqiAp2 0.06
pqiAp3 (nd)
pqiA pqiAp (nd)
pqiAp1 0.06
pqiAp2 0.06
pqiAp3 (nd)
purA purAp 0.13
putA putAp 0.06
waaY rirAp 0.03
waaQp (nd)
waaYp (nd)
rob robp (nd)
slp slpp 0.22
sodA sodAp 0.27
tolC tolCp1 (nd)
tolCp2 (nd)
tolCp3 (nd)
tolCp4 (nd)
tolC tolCp1 (nd)
tolCp2 (nd)
tolCp3 (nd)
tolCp4 (nd)
xseA xseAp 0.14
ybjC ybjCp 0.20
ycgZ ycgZp (nd)
ycgZp2 (nd)
ycgZ ycgZp (nd)
ycgZp2 (nd)
yncE yncEp (nd)
zwf zwfp 0.03



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