RegulonDB evolutionary first Genes of Regulon
   

Summary of evolutionary conservation promoters regulated by GadX

The evolutionary conservation of promoters is limited to Gammaproteobacteria and to sigma70 promoters. In general an promoter is conserved if, i) the position of the promoter from the gene start is conserved, or ii) the promoter sequence recognized by the sigma70 factor is conserved (p < 0.0001). To avoid redundancy, the orthologous regions were purged using the program Purge-Sequence from RSAtools. Orthologs consisted of BLAST reciprocal best hits using soft masking and Smith-Waterman alignments.


First gene Promoter name Evolutionary conservation ratio (nd) Footprint conservation
asnB asnBp (nd)
btuB btuBp 0.12
cadB cadBp (nd)
gadA gadAp (nd)
gadAp2 (nd)
gadA gadAp (nd)
gadAp2 (nd)
gadB gadBp 0.33
gadBp2 (nd)
gadB gadBp 0.33
gadBp2 (nd)
gadE gadEp (nd)
gadEp1 (nd)
gadEp3 0.33
gadEp4 (nd)
gadE gadEp (nd)
gadEp1 (nd)
gadEp3 0.33
gadEp4 (nd)
gadW gadWp1 (nd)
gadWp2 (nd)
gadXp (nd)
gadX gadAp (nd)
gadAp2 (nd)
gadXp (nd)
gadXp (nd)
gadX gadAp (nd)
gadAp2 (nd)
gadXp (nd)
gadXp (nd)
gadY gadYp (nd)
glnK glnKp (nd)
glsA glsAp (nd)
hdeA hdeAp 0.33
hdeAp2 (nd)
hdeA hdeAp 0.33
hdeAp2 (nd)
hdeD hdeDp 0.30
hdeDp2 (nd)
hdeD hdeDp 0.30
hdeDp2 (nd)
hns hnsp 0.57
lon clpXp (nd)
lonp 0.42
lonp2 (nd)
lon clpXp (nd)
lonp 0.42
lonp2 (nd)
rpoS nlpDp1 0.03
nlpDp2 0.03
rpoSp 0.43
rpoSp1 (nd)
rpoSp2 (nd)
rpoSp3 (nd)
rpoSp4 (nd)
slp slpp 0.22
dtpA tppBp 0.07
uspE uspEp (nd)
ydeN ydeNp (nd)
ynfB ynfBp (nd)



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