RegulonDB evolutionary first Genes of Regulon
   

Summary of evolutionary conservation promoters regulated by PhoP

The evolutionary conservation of promoters is limited to Gammaproteobacteria and to sigma70 promoters. In general an promoter is conserved if, i) the position of the promoter from the gene start is conserved, or ii) the promoter sequence recognized by the sigma70 factor is conserved (p < 0.0001). To avoid redundancy, the orthologous regions were purged using the program Purge-Sequence from RSAtools. Orthologs consisted of BLAST reciprocal best hits using soft masking and Smith-Waterman alignments.


First gene Promoter name Evolutionary conservation ratio (nd) Footprint conservation
acrA acrAp 0.24
argD argDp 0.40
borD borDp (nd)
clpS clpSp (nd)
cysB cysBp 0.08
dcuD dcuDp 0.17
dcuDp2 (nd)
fadL fadLp (nd)
gadE gadEp (nd)
gadEp1 (nd)
gadEp3 0.33
gadEp4 (nd)
gadW gadWp1 (nd)
gadWp2 (nd)
gadXp (nd)
glgA glgAp 0.04
glgBp 0.13
glgCp1 (nd)
glgCp2 (nd)
glgCp3 (nd)
glgB glgBp 0.13
hdeA hdeAp 0.33
hdeAp2 (nd)
hdeA hdeAp 0.33
hdeAp2 (nd)
hdeD hdeDp 0.30
hdeDp2 (nd)
hdeD hdeDp 0.30
hdeDp2 (nd)
hemL hemLp (nd)
hemLp1 (nd)
hemLp2 (nd)
iraM iraMp (nd)
iraMp2 0.50
iraM iraMp (nd)
iraMp2 0.50
malS malSp (nd)
metB metBp 0.24
mgrB mgrBp (nd)
mgrR mgrRp (nd)
mgtL mgtAp1 (nd)
mgtAp2 (nd)
mgtS mgtSp (nd)
nagA nagAp (nd)
nagBp 0.08
ompT ompTp (nd)
pagP pagPp (nd)
phoP phoPp1 (nd)
phoPp2 (nd)
phoPp3 (nd)
phoP phoPp1 (nd)
phoPp2 (nd)
phoPp3 (nd)
purH purHp 0.01
rstA rstAp (nd)
rutA rutAp (nd)
safA safAp (nd)
slyB slyBp1 (nd)
slyBp2 (nd)
slyB slyBp1 (nd)
slyBp2 (nd)
tolC tolCp1 (nd)
tolCp2 (nd)
tolCp3 (nd)
tolCp4 (nd)
treR treRp1 0.13
treRp2 0.22
treRp3 (nd)
treRp4 0.13
treR treRp1 0.13
treRp2 0.22
treRp3 (nd)
treRp4 0.13
ybjG ybjGp (nd)
ydeP ydePp 0.04
yrbL yrbLp (nd)



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