RegulonDB evolutionary first Genes of Regulon
   

Summary of evolutionary conservation promoters regulated by NsrR

The evolutionary conservation of promoters is limited to Gammaproteobacteria and to sigma70 promoters. In general an promoter is conserved if, i) the position of the promoter from the gene start is conserved, or ii) the promoter sequence recognized by the sigma70 factor is conserved (p < 0.0001). To avoid redundancy, the orthologous regions were purged using the program Purge-Sequence from RSAtools. Orthologs consisted of BLAST reciprocal best hits using soft masking and Smith-Waterman alignments.


First gene Promoter name Evolutionary conservation ratio (nd) Footprint conservation
aceE aceEp 0.02
aceEp2 (nd)
pdhRp 0.16
pdhRp2 (nd)
aceE aceEp 0.02
aceEp2 (nd)
pdhRp 0.16
pdhRp2 (nd)
bamE bamEp (nd)
bdcA bdcAp 0.25
cdd cddp 0.16
dkgB dkgBp (nd)
dsdC dsdCp 0.08
feaB feaBp1 (nd)
feaBp2 (nd)
feaR feaRp (nd)
feaRp1 (nd)
feaRp2 (nd)
feaRp3 (nd)
fliA fliAp1 (nd)
fliAp2 (nd)
fliA fliAp1 (nd)
fliAp2 (nd)
grxD grxD 0.02
hcp hcpp (nd)
hcpp (nd)
hcpp2 (nd)
hcp hcpp (nd)
hcpp (nd)
hcpp2 (nd)
hmp hmpp (nd)
hycA hycAp (nd)
hypA hypAp (nd)
hypAp (nd)
hypA hypAp (nd)
hypAp (nd)
lrp lrpp 0.37
mepH mepHp 0.09
mhpT mhpTp (nd)
ndh ndhp 0.22
norR norRp (nd)
nrfA nrfAp 0.04
pgpC pgpCp (nd)
rfe rfep (nd)
rybB rybBp (nd)
sodB sodBp 0.17
sufA sufAp 0.36
tehA tehAp (nd)
thrS thrSp (nd)
thrSp (nd)
thrS thrSp (nd)
thrSp (nd)
tsgA tsgAp (nd)
ydbD ydbDp (nd)
yeaE yeaEp (nd)
yeaR yeaRp 0.12
ygbA ygbAp (nd)
waaH yibDp1 0.17
ytfE ytfEp (nd)



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