RegulonDB evolutionary first Genes of Regulon
   

Summary of evolutionary conservation promoters regulated by NtrC

The evolutionary conservation of promoters is limited to Gammaproteobacteria and to sigma70 promoters. In general an promoter is conserved if, i) the position of the promoter from the gene start is conserved, or ii) the promoter sequence recognized by the sigma70 factor is conserved (p < 0.0001). To avoid redundancy, the orthologous regions were purged using the program Purge-Sequence from RSAtools. Orthologs consisted of BLAST reciprocal best hits using soft masking and Smith-Waterman alignments.


First gene Promoter name Evolutionary conservation ratio (nd) Footprint conservation
argT argTp (nd)
astC astCp1 0.04
astCp2 (nd)
astCp3 (nd)
cbl cblp 0.05
ddpX ddpXp1 (nd)
ddpXp2 (nd)
ddpXp3 (nd)
glnA glnAp1 0.04
glnAp1 0.04
glnAp2 (nd)
glnAp2 (nd)
glnA glnAp1 0.04
glnAp1 0.04
glnAp2 (nd)
glnAp2 (nd)
glnA glnAp1 0.04
glnAp1 0.04
glnAp2 (nd)
glnAp2 (nd)
glnA glnAp1 0.04
glnAp1 0.04
glnAp2 (nd)
glnAp2 (nd)
glnH glnHp1 (nd)
glnHp2 (nd)
glnK glnKp (nd)
glnL glnAp1 0.04
glnAp2 (nd)
glnLp 0.09
nac nacp (nd)
patA patAp (nd)
patAp2 (nd)
patA patAp (nd)
patAp2 (nd)
potF potFp1 (nd)
potFp2 (nd)
relA relAp1 0.18
relAp2 0.02
relAp3 (nd)
relAp4 (nd)
rseD rpoEp1a (nd)
rpoEp1b (nd)
rpoEp2b (nd)
rpoEp4 (nd)
rseDp (nd)
rseD rpoEp1a (nd)
rpoEp1b (nd)
rpoEp2b (nd)
rpoEp4 (nd)
rseDp (nd)
rutA rutAp (nd)
yeaG yeaGp1 (nd)
yeaGp2 (nd)
yhdW yhdWp (nd)



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