RegulonDB RegulonDB 10.9: Operon Form Help
Regulon form help



Transcription Factor
Name: Name of the transcription factor -TF
Synonym(s):Alternative names that identify the same transcription factor.
Gene name(s): Names of genes producing the transcription factor.
Conformation(s): Active binding conformation of the transcription factor.
Coregulator(s):Other transcription factors that are regulating different promoters with the TF.



Regulation exerted by  Name of the regulon simple or complex.
Each regulon is grouped in functional sets according with the function of the TF on the promoter. Each group displays information related to the regulatory interaction (interaction between the conformation of the TF, the promoter, the bindig site and genes).

Transcription Factor Conformation: Active binding conformation of the transcription factor.
Transcription Factor Function: The effect of the TF on the promoter [activator, repressor, dual, unknown].
Regulated Promoter:
Name of the regulated promoter.
Regulated Gene(s): Names of the regulated genes.
Binding Site LeftPos:  Start absolute position in the genome of the TF binding site
.
Binding Site RightPos:  Start absolute position in the genome of the TF binding site.
Central Rel-Pos: Distance from +1 of the promoter to the center position of the binding site.
Binding Site Sequence: DNA Sequence of the binding site. The uppercases are the experimental site and the10 lowercases in each side are the boundaries.
Evidence: Experimental or computational methods that support information about a regulatory interaction.
Reference(s): Original literature source in which a regulatory interaction (TF, promoter, function) was identified.








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