RegulonDB RegulonDB 10.9:Coexpression
   


Gene Coexpression in Escherichia coli K-12 genome


 

This section aims to give an overview of different features that are known about the query genes, such as their transcriptional regulation, their gene product, the operon to which they belong and the description of gene ontologies they are associated to. In the case one or more of the input genes are not found in our database, they will appear under the section "gene (s) not found". The table can be sorted by any of the features by clicking icon attached to the name of the feature´s associated column.

Query size: 84 gene(s)


  Gene name Product Operon Gene regulation GOs list
  aceE subunit of E1p component of pyruvate dehydrogenase complex pdhR-aceEF-lpd ArcA , CRP , Cra , FNR , NsrR , PdhR view
  aceF pyruvate dehydrogenase, E2 subunit pdhR-aceEF-lpd ArcA , CRP , Cra , FNR , NsrR , PdhR view
  bamE Outer Membrane Protein Assembly Complex - BamE subunit bamE CpxR , NsrR view
  bdcA c-di-GMP binding protein involved in biofilm dispersal bdcA NsrR view
  cdd cytidine deaminase cdd CRP , CytR , NsrR view
  dkgB methylglyoxal reductase/4-nitrobenzaldehyde reductase/2,5-diketo-D-gluconate reductase dkgB NsrR view
  dsdC DsdC DNA-binding transcriptional dual regulator dsdC DsdC , NsrR view
  feaB phenylacetaldehyde dehydrogenase feaB CRP , FeaR , NsrR view
  feaR FeaR DNA-binding transcriptional activator feaR CRP , Nac , NsrR , PhoB view
  fhlA FhlA transcriptional activator hypABCDE-fhlA FNR , FhlA , IHF , NsrR view
  fliA RNA polymerase, sigma 28 (sigma F) factor fliAZ-tcyJ CsgD , FlhDC , MatA , NsrR , SutR view
  fliZ FliZ DNA-binding transcriptional regulator fliAZ-tcyJ CsgD , FlhDC , MatA , NsrR , SutR view
  grxD glutaredoxin 4 grxD NsrR view
  hcp nitric oxide reductase hcp-hcr FNR , NarL , NarP , NsrR , OxyR view
  hcr NADH oxidoreductase hcp-hcr FNR , NarL , NarP , NsrR , OxyR view
  hmp nitric oxide dioxygenase hmp FNR , Fur , MetR , NsrR view
  hycA regulator of the transcriptional regulator FhlA hycABCDEFGHI FhlA , IHF , ModE , NsrR view
  hycB hydrogenase 3, Fe-S subunit hycABCDEFGHI FhlA , IHF , ModE , NsrR view
  hycC hydrogenase 3, membrane subunit hycABCDEFGHI FhlA , IHF , ModE , NsrR view
  hycD hydrogenase 3, membrane subunit hycABCDEFGHI FhlA , IHF , ModE , NsrR view
  hycE hydrogenase 3, large subunit hycABCDEFGHI FhlA , IHF , ModE , NsrR view
  hycF formate hydrogenlyase complex iron-sulfur protein hycABCDEFGHI FhlA , IHF , ModE , NsrR view
  hycG hydrogenase 3 and formate hydrogenlyase complex, HycG subunit hycABCDEFGHI FhlA , IHF , ModE , NsrR view
  hycH protein required for maturation of hydrogenase 3 hycABCDEFGHI FhlA , IHF , ModE , NsrR view
  hycI hydrogenase 3 maturation protease hycABCDEFGHI FhlA , IHF , ModE , NsrR view
  hypA accessory protein for nickel incorporation into hydrogenase 3 hypABCDE-fhlA FhlA , IHF , NsrR view
  hypB accessory protein for nickel incorporation into hydrogenase isoenzymes hypABCDE-fhlA FNR , FhlA , IHF , NsrR view
  hypC HypC, protein involved in hydrogenase 3 maturation hypABCDE-fhlA FNR , FhlA , IHF , NsrR view
  hypD HypD, scaffold protein for assembly of the Fe-(CN)2CO cofactor hypABCDE-fhlA FNR , FhlA , IHF , NsrR view
  hypE hydrogenase maturation protein, carbamoyl dehydratase hypABCDE-fhlA FNR , FhlA , IHF , NsrR view
  ihfA integration host factor (IHF), α subunit thrS-infC-rpmI-rplT-pheMST-ihfA IHF , NsrR view
  infC protein chain initiation factor IF-3 thrS-infC-rpmI-rplT-pheMST-ihfA NsrR view
  lrp Lrp transcriptional dual regulator lrp GadE , Lrp , NsrR view
  mepH murein DD-endopeptidase MepH mepH NsrR view
  mhpT 3-hydroxyphenylpropionate / 3-hydroxycinnamate:H+ symporter mhpT NsrR view
  ndh NADH:quinone oxidoreductase II ndh ArcA , FNR , Fis , Fur , IHF , NsrR , PdhR view
  norR NorR DNA-binding transcriptional dual regulator norR NorR , NsrR view
  nrfA formate-dependent nitrite reductase - NrfA subunit nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  nrfB formate-dependent nitrite reductase - penta-heme cytochrome c nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  nrfC formate-dependent nitrite reductase, 4Fe-4S subunit nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  nrfD formate-dependent nitrite reductase - NrfD subunit nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  nrfE formate-dependent nitrite reductase; possible assembly function nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  nrfF activator of formate-dependent nitrite reductase complex nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  nrfG NrfG nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  pgpC phosphatidylglycerophosphatase C pgpC-tadA NsrR view
  pheM phenylalanyl-tRNA synthetase (pheST) operon leader peptide thrS-infC-rpmI-rplT-pheMST-ihfA FNR , NsrR view
  pheS phenylalanine-tRNA ligase α-chain thrS-infC-rpmI-rplT-pheMST-ihfA NsrR view
  pheT phenylalanine-tRNA ligase β-chain thrS-infC-rpmI-rplT-pheMST-ihfA NsrR view
  poxB pyruvate oxidase poxB-ltaE-ybjT Cra , MarA , SoxS view
  rfe undecaprenyl-phosphate α-N-acetylglucosaminyl transferase rfe-wzzE-wecBC-rffGHC-wecE-wzxE-rffT-wzyE-rffM NsrR view
  rffC dTDP-fucosamine acetyltransferase rfe-wzzE-wecBC-rffGHC-wecE-wzxE-rffT-wzyE-rffM NsrR view
  rffG dTDP-glucose 4,6-dehydratase 2 rfe-wzzE-wecBC-rffGHC-wecE-wzxE-rffT-wzyE-rffM NsrR view
  rffH dTDP-glucose pyrophosphorylase 2 rfe-wzzE-wecBC-rffGHC-wecE-wzxE-rffT-wzyE-rffM NsrR view
  rffM UDP-N-acetyl-D-mannosaminuronic acid transferase rfe-wzzE-wecBC-rffGHC-wecE-wzxE-rffT-wzyE-rffM NsrR view
  rplT 50S ribosomal subunit protein L20 thrS-infC-rpmI-rplT-pheMST-ihfA FNR , NsrR view
  rpmI 50S ribosomal subunit protein L35 thrS-infC-rpmI-rplT-pheMST-ihfA NsrR view
  rybB RybB rybB NsrR view
  sodB superoxide dismutase (Fe) sodB CRP , IHF , NsrR view
  sufA Fe-S transport protein in Fe-S cluster assembly sufABCDSE Fur , IHF , IscR , NsrR , OxyR view
  sufB SufB component of SufBCD Fe-S cluster scaffold complex sufABCDSE Fur , IHF , IscR , NsrR , OxyR view
  sufC SufC component of SufBCD Fe-S cluster scaffold complex sufABCDSE Fur , IHF , IscR , NsrR , OxyR view
  sufD SufD component of SufBCD Fe-S cluster scaffold complex sufABCDSE Fur , IHF , IscR , NsrR , OxyR view
  sufE sulfur acceptor for SufS cysteine desulfurase sufABCDSE Fur , IHF , IscR , NsrR , OxyR view
  sufS L-cysteine desulfurase sufABCDSE Fur , IHF , IscR , NsrR , OxyR view
  tadA tRNA-specific adenosine deaminase pgpC-tadA NsrR view
  tcyJ cystine/cysteine ABC transporter - periplasmic binding protein fliAZ-tcyJ CsgD , CysB , FlhDC , MatA , NsrR , SutR view
  tehA tellurite resistance protein / ethidium exporter tehAB NsrR view
  tehB tellurite methyltransferase tehAB NsrR view
  thrS threonine-tRNA ligase thrS-infC-rpmI-rplT-pheMST-ihfA NsrR view
  tsgA putative transport protein, major facilitator superfamily (MFS), implicated in the response to tellurite and selenite tsgA NsrR view
  waaH UDP-glucuronate:LPS(HepIII) glycosyltransferase waaH NsrR , PhoB view
  wecB UDP-N-acetylglucosamine 2-epimerase rfe-wzzE-wecBC-rffGHC-wecE-wzxE-rffT-wzyE-rffM NsrR view
  wecC UDP-N-acetyl-D-mannosamine dehydrogenase rfe-wzzE-wecBC-rffGHC-wecE-wzxE-rffT-wzyE-rffM NsrR view
  wecE dTDP-4-dehydro-6-deoxy-D-glucose transaminase rfe-wzzE-wecBC-rffGHC-wecE-wzxE-rffT-wzyE-rffM NsrR view
  rffT 4-acetamido-4,6-dideoxy-D-galactose transferase rfe-wzzE-wecBC-rffGHC-wecE-wzxE-rffT-wzyE-rffM NsrR view
  wzxE lipid III flippase rfe-wzzE-wecBC-rffGHC-wecE-wzxE-rffT-wzyE-rffM NsrR view
  wzyE predicted Wzy protein involved in ECA polysaccharide chain elongation rfe-wzzE-wecBC-rffGHC-wecE-wzxE-rffT-wzyE-rffM NsrR view
  wzzE Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein rfe-wzzE-wecBC-rffGHC-wecE-wzxE-rffT-wzyE-rffM NsrR view
  ydbD protein involved in detoxification of methylglyoxal ydbD NsrR view
  yeaE methylglyoxal reductase yeaE NsrR view
  yeaR conserved protein yeaR-yoaG Fis , NarL , NarP , NsrR view
  ygbA putative protein ygbA FNR , NsrR nd
  yoaG putative protein yeaR-yoaG Fis , NarL , NarP , NsrR nd
  ytfE iron-sulfur cluster repair protein YtfE ytfE FNR , NarL , NarP , NsrR view
RegulonDB