RegulonDB RegulonDB 10.9:Coexpression
   


Gene Coexpression in Escherichia coli K-12 genome


 

This section aims to give an overview of different features that are known about the query genes, such as their transcriptional regulation, their gene product, the operon to which they belong and the description of gene ontologies they are associated to. In the case one or more of the input genes are not found in our database, they will appear under the section "gene (s) not found". The table can be sorted by any of the features by clicking icon attached to the name of the feature´s associated column.

Query size: 124 gene(s)


  Gene name Product Operon Gene regulation GOs list
  adhE aldehyde-alcohol dehydrogenase adhE Cra , FNR , Fis , Lrp , NarL view
  aspA aspartate ammonia-lyase aspA-dcuA CRP , FNR , NarL view
  caiF CaiF transcriptional activator caiF CRP , FNR , NarL view
  ccmA ABC complex for formation and release of holoCcmE - ATP binding subunit napFDAGHBC-ccmABCDEFGH FNR , FlhDC , ModE , NarL , NarP view
  ccmB ABC complex for formation and release of holoCcmE - membrane subunit CcmB napFDAGHBC-ccmABCDEFGH FNR , FlhDC , ModE , NarL , NarP view
  ccmC ABC complex for formation and release of holoCcmE - membrane subunit CcmC napFDAGHBC-ccmABCDEFGH FNR , FlhDC , ModE , NarL , NarP view
  ccmD ABC complex for formation and release of holoCcmE - membrane subunit CcmD napFDAGHBC-ccmABCDEFGH FNR , FlhDC , ModE , NarL , NarP view
  ccmE membrane anchored periplasmic heme chaperone CcmE napFDAGHBC-ccmABCDEFGH FNR , FlhDC , ModE , NarL , NarP view
  ccmF holocytochrome c synthetase - CcmF subunit napFDAGHBC-ccmABCDEFGH FNR , FlhDC , ModE , NarL , NarP view
  ccmG holocytochrome c synthetase - thiol:disulfide oxidoreductase CcmG napFDAGHBC-ccmABCDEFGH FNR , FlhDC , ModE , NarL , NarP view
  ccmH holocytochrome c synthetase - thiol:disulfide oxidoreductase CcmH napFDAGHBC-ccmABCDEFGH FNR , FlhDC , ModE , NarL , NarP view
  citC citrate lyase synthetase citCDEFXG ArcA , CRP , DpiA , FNR , NarL view
  citD citrate lyase, acyl carrier γ subunit citCDEFXG ArcA , CRP , DpiA , FNR , NarL view
  citE citrate lyase, citryl-ACP lyase β subunit citCDEFXG ArcA , CRP , DpiA , FNR , NarL view
  citF citrate lyase, citrate-ACP transferase α subunit citCDEFXG ArcA , CRP , DpiA , FNR , NarL view
  citG triphosphoribosyl-dephospho-CoA synthase citCDEFXG ArcA , CRP , DpiA , FNR , NarL view
  citX apo-citrate lyase phosphoribosyl-dephospho-CoA transferase citCDEFXG ArcA , CRP , DpiA , FNR , NarL view
  cydC glutathione / L-cysteine exporter - CydC subunit cydDC ArcA , FNR , NarL view
  cydD glutathione / L-cysteine exporter - CydD subunit cydDC ArcA , FNR , NarL view
  cysG siroheme synthase subunit nirBDC-cysG CRP , Cra , FNR , Fis , IHF , NarL , NarP view
  dcuA dicarboxylate transporter DcuA aspA-dcuA CRP , FNR , NarL view
  dcuB dicarboxylate transporter DcuB dcuB-fumB CRP , DcuR , FNR , NarL view
  dcuR DcuR transcriptional activator dcuSR CRP , FNR , NarL view
  dcuS DcuS sensory histidine kinase dcuSR FNR , NarL view
  dmsA dimethyl sulfoxide reductase, chain A dmsABC FNR , Fis , IHF , ModE , NarL view
  dmsB dimethyl sulfoxide reductase, chain B dmsABC FNR , Fis , IHF , ModE , NarL view
  dmsC dimethyl sulfoxide reductase, chain C dmsABC FNR , Fis , IHF , ModE , NarL view
  dmsD DMS reductase maturation protein ynfEFGH-dmsD FNR , NarL view
  dpiA DpiA transcriptional dual regulator dpiBA ArcA , CRP , DcuR , DpiA , FNR , NarL view
  dpiB DpiB sensory histidine kinase dpiBA ArcA , CRP , DcuR , DpiA , FNR , NarL view
  fdhF formate dehydrogenase H fdhF FNR , FhlA , NarL , NarP view
  fdnG formate dehydrogenase N, α subunit fdnGHI FNR , NarL , NarP view
  fdnH formate dehydrogenase N, β subunit fdnGHI FNR , NarL , NarP view
  fdnI formate dehydrogenase N, γ subunit fdnGHI FNR , NarL , NarP view
  focA formate channel FocA focA-pflB ArcA , CRP , FNR , IHF , NarL view
  frdA fumarate reductase flavoprotein frdABCD DcuR , FNR , NarL view
  frdB fumarate reductase iron-sulfur protein frdABCD DcuR , FNR , NarL view
  frdC fumarate reductase membrane protein frdABCD DcuR , FNR , NarL view
  frdD fumarate reductase membrane protein frdABCD DcuR , FNR , NarL view
  fumB fumarase B dcuB-fumB ArcA , CRP , DcuR , FNR , Fis , Fur , NarL view
  hcp nitric oxide reductase hcp-hcr FNR , NarL , NarP , NsrR , OxyR view
  hcr NADH oxidoreductase hcp-hcr FNR , NarL , NarP , NsrR , OxyR view
  hyaA hydrogenase 1, small subunit hyaABCDEF AppY , ArcA , Fis , IscR , NarL , NarP , YdeO view
  hyaB hydrogenase 1, large subunit hyaABCDEF AppY , ArcA , Fis , IscR , NarL , NarP , YdeO view
  hyaC hydrogenase 1, b-type cytochrome subunit hyaABCDEF AppY , ArcA , Fis , IscR , NarL , NarP , YdeO view
  hyaD protein involved in processing of HyaA and HyaB proteins hyaABCDEF AppY , ArcA , Fis , IscR , NarL , NarP , YdeO view
  hyaE protein involved in quality control of HyaA hyaABCDEF AppY , ArcA , Fis , IscR , NarL , NarP , YdeO view
  hyaF protein involved in nickel incorporation into hydrogenase 1 proteins hyaABCDEF AppY , ArcA , Fis , IscR , NarL , NarP , YdeO view
  hybA hydrogenase 2 - [Fe-S] binding, ferredoxin-type component HybA hybOABCDEFG ArcA , NarL view
  hybB hydrogenase 2 - integral membrane subunit HybB hybOABCDEFG ArcA , NarL view
  hybC hydrogenase 2, large subunit hybOABCDEFG ArcA , NarL view
  hybD predicted maturation peptidase for hydrogenase 2 hybOABCDEFG ArcA , NarL view
  hybE hydrogenase 2-specific chaperone hybOABCDEFG ArcA , NarL view
  hybF protein involved with the maturation of hydrogenases 1 and 2 hybOABCDEFG ArcA , NarL view
  hybG hydrogenase 2 accessory protein hybOABCDEFG ArcA , NarL view
  hybO hydrogenase 2, small subunit hybOABCDEFG ArcA , NarL view
  moeA molybdopterin molybdenumtransferase moeAB ArcA , FNR , NarL view
  moeB molybdopterin-synthase adenylyltransferase moeAB ArcA , FNR , NarL view
  napA large subunit of periplasmic nitrate reductase, molybdoprotein napFDAGHBC-ccmABCDEFGH FNR , FlhDC , IscR , ModE , NarL , NarP view
  napB subunit of periplasmic nitrate reductase, cytochrome c550 protein napFDAGHBC-ccmABCDEFGH FNR , FlhDC , IscR , ModE , NarL , NarP view
  napC periplasmic nitrate reductase, cytochrome c protein napFDAGHBC-ccmABCDEFGH FNR , FlhDC , IscR , ModE , NarL , NarP view
  napD signal peptide-binding chaperone for NapA napFDAGHBC-ccmABCDEFGH FNR , FlhDC , IscR , ModE , NarL , NarP view
  napF ferredoxin-type protein napFDAGHBC-ccmABCDEFGH FNR , FlhDC , IscR , ModE , NarL , NarP view
  napG ferredoxin-type protein napFDAGHBC-ccmABCDEFGH FNR , FlhDC , IscR , ModE , NarL , NarP view
  napH ferredoxin-type protein napFDAGHBC-ccmABCDEFGH FNR , FlhDC , IscR , ModE , NarL , NarP view
  narG nitrate reductase A, α subunit narGHJI FNR , Fis , IHF , NarL , RstA view
  narH nitrate reductase A, β subunit narGHJI FNR , Fis , IHF , NarL , RstA view
  narI nitrate reductase A, γ subunit narGHJI FNR , Fis , IHF , NarL , RstA view
  narJ molybdenum cofactor assembly chaperone subunit (δ subunit) of nitrate reductase 1 narGHJI FNR , Fis , IHF , NarL , RstA view
  narK nitrate:nitrite antiporter NarK narK FNR , Fis , IHF , NarL view
  nikA nickel ABC transporter - periplasmic binding protein nikABCDER FNR , NarL , NikR view
  nikB nickel ABC transporter - membrane subunit nikABCDER FNR , NarL , NikR view
  nikC nickel ABC transporter - membrane subunit nikABCDER FNR , NarL , NikR view
  nikD nickel ABC transporter - ATP binding subunit nikABCDER FNR , NarL , NikR view
  nikE nickel ABC transporter - ATP binding subunit nikABCDER FNR , NarL , NikR view
  nikR NikR DNA-binding transcriptional repressor, Ni-binding nikABCDER FNR , NarL , NikR view
  nirB nitrite reductase, large subunit nirBDC-cysG CRP , Cra , FNR , Fis , IHF , NarL , NarP view
  nirC nitrite transporter NirC nirBDC-cysG CRP , Cra , FNR , Fis , IHF , NarL , NarP view
  nirD nitrite reductase, small subunit nirBDC-cysG CRP , Cra , FNR , Fis , IHF , NarL , NarP view
  norV flavorubredoxin norVW FNR , IHF , NarL , NarP , NorR view
  norW NADH:flavorubredoxin reductase norVW FNR , IHF , NarL , NarP , NorR view
  nrfA formate-dependent nitrite reductase - NrfA subunit nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  nrfB formate-dependent nitrite reductase - penta-heme cytochrome c nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  nrfC formate-dependent nitrite reductase, 4Fe-4S subunit nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  nrfD formate-dependent nitrite reductase - NrfD subunit nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  nrfE formate-dependent nitrite reductase; possible assembly function nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  nrfF activator of formate-dependent nitrite reductase complex nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  nrfG NrfG nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  nuoA NADH:ubiquinone oxidoreductase, membrane subunit A nuoABCEFGHIJKLMN ArcA , FNR , Fis , IHF , NarL view
  nuoB NADH:ubiquinone oxidoreductase, chain B nuoABCEFGHIJKLMN ArcA , FNR , Fis , IHF , NarL view
  nuoC NADH:ubiquinone oxidoreductase, chain CD nuoABCEFGHIJKLMN ArcA , FNR , Fis , IHF , NarL view
  nuoE NADH:ubiquinone oxidoreductase, chain E nuoABCEFGHIJKLMN ArcA , FNR , Fis , IHF , NarL view
  nuoF NADH:ubiquinone oxidoreductase, chain F nuoABCEFGHIJKLMN ArcA , FNR , Fis , IHF , NarL view
  nuoG NADH:ubiquinone oxidoreductase, chain G nuoABCEFGHIJKLMN ArcA , FNR , Fis , IHF , NarL view
  nuoH NADH:ubiquinone oxidoreductase, membrane subunit H nuoABCEFGHIJKLMN ArcA , FNR , Fis , IHF , NarL view
  nuoI NADH:ubiquinone oxidoreductase, chain I nuoABCEFGHIJKLMN ArcA , FNR , Fis , IHF , NarL view
  nuoJ NADH:ubiquinone oxidoreductase, membrane subunit J nuoABCEFGHIJKLMN ArcA , FNR , Fis , IHF , NarL view
  nuoK NADH:ubiquinone oxidoreductase, membrane subunit K nuoABCEFGHIJKLMN ArcA , FNR , Fis , IHF , NarL view
  nuoL NADH:ubiquinone oxidoreductase, membrane subunit L nuoABCEFGHIJKLMN ArcA , FNR , Fis , IHF , NarL view
  nuoM NADH:ubiquinone oxidoreductase, membrane subunit M nuoABCEFGHIJKLMN ArcA , FNR , Fis , IHF , NarL view
  nuoN NADH:ubiquinone oxidoreductase, membrane subunit N nuoABCEFGHIJKLMN ArcA , FNR , Fis , IHF , NarL view
  ogt O6-alkylguanine-DNA-alkyltransferase