RegulonDB

This section allows the user to display the top 50 genes that are most highly coexpressed with each query gene. Each tab that is displayed represents one of the query genes. Within each tab or gene two sections are shown for this gene, the first section being "GENE INFORMATION" displaying information about the transcriptional regulation of that gene, and the second section being "THE TOP 50 COEXPRESSED GENES" showing the top 50 genes most highly coexpressed with that gene and their information on transcriptional regulation.
For more details of the coexpression method see the user guide.

This section aims to give an overview of different features that are known about the query genes, such as their transcriptional regulation, their gene product, the operon to which they belong and the description of gene ontologies they are associated to. In the case one or more of the input genes are not found in our database, they will appear under the section "gene (s) not found". The table can be sorted by any of the features by clicking icon attached to the name of the feature´s associated column.

Query size: 8 gene(s)

Gene name	Product	Operon	Gene regulation	GOs list
ihfA	integration host factor (IHF), α subunit	thrS-infC-rpmI-rplT-pheMST-ihfA	IHF , NsrR	view
infC	protein chain initiation factor IF-3	thrS-infC-rpmI-rplT-pheMST-ihfA	NsrR	view
pheM	phenylalanyl-tRNA synthetase (pheST) operon leader peptide	thrS-infC-rpmI-rplT-pheMST-ihfA	FNR , NsrR	view
pheS	phenylalanine-tRNA ligase α-chain	thrS-infC-rpmI-rplT-pheMST-ihfA	NsrR	view
pheT	phenylalanine-tRNA ligase β-chain	thrS-infC-rpmI-rplT-pheMST-ihfA	NsrR	view
rplT	50S ribosomal subunit protein L20	thrS-infC-rpmI-rplT-pheMST-ihfA	FNR , NsrR	view
rpmI	50S ribosomal subunit protein L35	thrS-infC-rpmI-rplT-pheMST-ihfA	NsrR	view
thrS	threonine-tRNA ligase	thrS-infC-rpmI-rplT-pheMST-ihfA	NsrR	view

This section aims matrixHeatMap..". The table can be sorted by any of the features by clicking icon attached to the name of the feature´s associated column.

Color range

The coexpression strength of a gene pair is given by the SCR (Spearman Correlation Rank, user guide). Each coexpression block is colored by a logarithmic color-scale (see legend). The highest value (high coexpression) is SCR=1 and the lowest value (no coexpression) is SCR=4320.

High coexpression

No coexpression


1-43	44-173	174-389	390-691	692-1080	1081-1555	1556-2117	2118-2765	2766-3499	3500-4320

Show the top 50 ranking of:

View Coexpression value