RegulonDB RegulonDB 10.9:Coexpression

Gene Coexpression in Escherichia coli K-12 genome


This section aims to give an overview of different features that are known about the query genes, such as their transcriptional regulation, their gene product, the operon to which they belong and the description of gene ontologies they are associated to. In the case one or more of the input genes are not found in our database, they will appear under the section "gene (s) not found". The table can be sorted by any of the features by clicking icon attached to the name of the feature´s associated column.

Query size: 45 gene(s)

  Gene name Product Operon Gene regulation GOs list
  acnA aconitate hydratase 1 acnA ArcA , CRP , Cra , FNR , MarA , Rob , SoxS view
  acrA AcrAB-TolC multidrug efflux pump - membrane fusion protein acrAB AcrR , EnvR , MarA , MprA , PhoP , Rob , SoxS view
  acrB AcrAB-TolC multidrug efflux pump - permease subunit acrAB AcrR , EnvR , MarA , MprA , PhoP , Rob , SoxS view
  acrZ small membrane protein that interacts with the AcrAB-TolC multidrug efflux pump acrZ MarA , Rob , SoxS view
  aldA aldehyde dehydrogenase A aldA ArcA , CRP , DnaA , FNR view
  decR DecR DNA-binding transcriptional activator decR MarA view
  fldA flavodoxin 1 fldA-uof-fur SoxS view
  fldB flavodoxin 2 fldB SoxS view
  fpr flavodoxin-NADP+ reductase/ferredoxin-NADP+ reductase fpr MarA , SoxS view
  fumC fumarase C fumAC ArcA , CRP , FNR , Fur , MarA , Rob , SoxR , SoxS view
  fur Fur transcriptional dual regulator fldA-uof-fur CRP , Fur , OxyR , SoxS view
  inaA pH-inducible protein involved in stress response inaA MarA , Rob , SoxS view
  marA MarA DNA-binding transcriptional dual regulator marRAB AcrR , CRP , CpxR , Cra , Fis , MarA , MarR , Rob , SoxS view
  marB multiple antibiotic resistance protein marRAB AcrR , CRP , CpxR , Cra , Fis , MarA , MarR , Rob , SoxS view
  marR MarR DNA-binding transcriptional repressor marRAB AcrR , CRP , CpxR , Cra , Fis , MarA , MarR , Rob , SoxS view
  micF MicF micF AcrR , HU , IHF , Lrp , MarA , OmpR , Rob , SoxS view
  nepI purine ribonucleoside exporter nepI nd view
  nfo endonuclease IV nfo MarA , Rob , SoxS view
  nfsA NADPH nitroreductase NfsA ybjC-nfsA-rimK-ybjN MarA , OxyR , Rob , SoxS view
  nfsB NAD(P)H nitroreductase NfsB nfsB MarA , Rob , SoxS view
  ompN outer membrane pore protein N, non-specific ydbK-ompN SoxS view
  ompW outer membrane protein W ompW ArcA , CRP , FNR , NarL view
  pgi phosphoglucose isomerase pgi SoxS view
  poxB pyruvate oxidase poxB-ltaE-ybjT Cra , MarA , SoxS view
  pqiA paraquat-inducible protein A pqiAB MarA , SoxS view
  pqiB paraquat-inducible protein B pqiAB MarA , SoxS view
  ymbA conserved protein ymbA nd view
  ptsG glucose PTS permease - PtsG subunit ptsG ArcA , CRP , Fis , Mlc , SoxS view
  ribA GTP cyclohydrolase II ribA SoxS view
  rimK ribosomal protein S6 modification protein ybjC-nfsA-rimK-ybjN MarA , OxyR , Rob , SoxS view
  rob Rob DNA-binding transcriptional dual regulator rob MarA , Rob , SoxS view
  sodA superoxide dismutase (Mn) sodA ArcA , CRP , FNR , Fur , IHF , MarA , Rob , SoxS view
  soxS SoxS DNA-binding transcriptional dual regulator soxS AcrR , FNR , Fur , SoxR , SoxS view
  tolC TolC outer membrane channel tolC-ygiABC MarA , PhoP , Rob , SoxS view
  uof RyhB-regulated fur leader peptide fldA-uof-fur OxyR , SoxS view
  waaY lipopolysaccharide core heptose (II) kinase rirA-waaQGPSBOJYZU MarA , SoxS view
  waaZ protein involved in KdoIII attachment during lipopolysaccharide core biosynthesis rirA-waaQGPSBOJYZU MarA , SoxS view
  ybjC predicted inner membrane protein ybjC-nfsA-rimK-ybjN MarA , OxyR , Rob , SoxS nd
  ybjN predicted oxidoreductase ybjC-nfsA-rimK-ybjN MarA , OxyR , Rob , SoxS view
  ydbK pyruvate:flavodoxin oxidoreductase ydbK-ompN SoxS view
  ygiB conserved outer membrane protein tolC-ygiABC MarA , PhoP , Rob , SoxS view
  ygiC predicted enzyme with ATPase activity tolC-ygiABC MarA , PhoP , Rob , SoxS view
  yrbL putative protein yrbL BasR , PhoP view
  zinT cadmium-induced cadmium binding protein zinT Fur , SoxS , Zur view
  zwf glucose-6-phosphate dehydrogenase (NADP+) zwf Cra , FNR , Fur , MarA , Rob , SoxS view