RegulonDB RegulonDB 10.9:Coexpression
   


Gene Coexpression in Escherichia coli K-12 genome


 

This section aims to give an overview of different features that are known about the query genes, such as their transcriptional regulation, their gene product, the operon to which they belong and the description of gene ontologies they are associated to. In the case one or more of the input genes are not found in our database, they will appear under the section "gene (s) not found". The table can be sorted by any of the features by clicking icon attached to the name of the feature´s associated column.

Query size: 82 gene(s)


  Gene name Product Operon Gene regulation GOs list
  ccmA ABC complex for formation and release of holoCcmE - ATP binding subunit napFDAGHBC-ccmABCDEFGH FNR , FlhDC , ModE , NarL , NarP view
  ccmB ABC complex for formation and release of holoCcmE - membrane subunit CcmB napFDAGHBC-ccmABCDEFGH FNR , FlhDC , ModE , NarL , NarP view
  ccmC ABC complex for formation and release of holoCcmE - membrane subunit CcmC napFDAGHBC-ccmABCDEFGH FNR , FlhDC , ModE , NarL , NarP view
  ccmD ABC complex for formation and release of holoCcmE - membrane subunit CcmD napFDAGHBC-ccmABCDEFGH FNR , FlhDC , ModE , NarL , NarP view
  ccmE membrane anchored periplasmic heme chaperone CcmE napFDAGHBC-ccmABCDEFGH FNR , FlhDC , ModE , NarL , NarP view
  ccmF holocytochrome c synthetase - CcmF subunit napFDAGHBC-ccmABCDEFGH FNR , FlhDC , ModE , NarL , NarP view
  ccmG holocytochrome c synthetase - thiol:disulfide oxidoreductase CcmG napFDAGHBC-ccmABCDEFGH FNR , FlhDC , ModE , NarL , NarP view
  ccmH holocytochrome c synthetase - thiol:disulfide oxidoreductase CcmH napFDAGHBC-ccmABCDEFGH FNR , FlhDC , ModE , NarL , NarP view
  flgA flagellar biosynthesis; assembly of basal-body periplasmic P ring flgAMN FlhDC view
  flgB flagellar basal-body rod protein FlgB flgBCDEFGHIJ FlhDC view
  flgC flagellar basal-body rod protein FlgC flgBCDEFGHIJ FlhDC view
  flgD flagellar biosynthesis, initiation of hook assembly flgBCDEFGHIJ FlhDC view
  flgE flagellar hook protein FlgE flgBCDEFGHIJ FlhDC view
  flgF flagellar basal-body rod protein FlgF flgBCDEFGHIJ FlhDC view
  flgG flagellar basal-body rod protein FlgG flgBCDEFGHIJ FlhDC view
  flgH flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein flgBCDEFGHIJ FlhDC view
  flgI flagellar P-ring protein FlgI flgBCDEFGHIJ FlhDC view
  flgJ FlgJ flgBCDEFGHIJ FlhDC view
  flgK flagellar biosynthesis, hook-filament junction protein 1 flgKL FlhDC view
  flgL flagellar biosynthesis; hook-filament junction protein flgKL FlhDC view
  flgM anti-sigma factor for FliA (σ28) flgAMN CsgD , FlhDC view
  flgN flagellar biosynthesis protein FlgN flgAMN CsgD , FlhDC view
  flhA flagellar biosynthesis protein FlhA flhBAE FlhDC view
  flhB flagellar biosynthesis protein FlhB flhBAE FlhDC view
  flhE flagellar protein flhBAE FlhDC view
  fliA RNA polymerase, sigma 28 (sigma F) factor fliAZ-tcyJ CsgD , FlhDC , MatA , NsrR , SutR view
  fliD flagellar cap protein FliD; filament capping protein; enables filament assembly fliDST FlhDC view
  fliE flagellar basal-body protein FliE fliE CsgD , FlhDC view
  fliF flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein fliFGHIJK CsgD , FlhDC view
  fliG flagellar motor switch protein FliG fliFGHIJK CsgD , FlhDC view
  fliH flagellar biosynthesis protein FliH fliFGHIJK CsgD , FlhDC view
  fliI flagellum-specific ATP synthase FliI fliFGHIJK CsgD , FlhDC view
  fliJ flagellar biosynthesis protein FliJ fliFGHIJK CsgD , FlhDC view
  fliK flagellar hook-length control protein FliK fliFGHIJK CsgD , FlhDC view
  fliL flagellar protein FliL fliLMNOPQR FlhDC view
  fliM flagellar motor switch protein FliM fliLMNOPQR FlhDC view
  fliN flagellar motor switch protein FliN fliLMNOPQR FlhDC view
  fliO flagellar biosynthesis protein FliO fliLMNOPQR FlhDC view
  fliP flagellar biosynthesis protein FliP fliLMNOPQR FlhDC view
  fliQ flagellar biosynthesis protein FliQ fliLMNOPQR FlhDC view
  fliR flagellar biosynthesis protein FliR fliLMNOPQR FlhDC view
  fliS flagellar biosynthesis protein FliS fliDST FlhDC view
  fliT flagellar biosynthesis protein FliT fliDST FlhDC view
  fliZ FliZ DNA-binding transcriptional regulator fliAZ-tcyJ CsgD , FlhDC , MatA , NsrR , SutR view
  glpA anaerobic glycerol-3-phosphate dehydrogenase subunit A glpABC ArcA , CRP , FNR , Fis , FlhDC , GlpR view
  glpB anaerobic glycerol-3-phosphate dehydrogenase subunit B glpABC ArcA , CRP , FNR , Fis , FlhDC , GlpR view
  glpC anaerobic glycerol-3-phosphate dehydrogenase subunit C glpABC ArcA , CRP , FNR , Fis , FlhDC , GlpR view
  gltI glutamate / aspartate ABC transporter - periplasmic binding protein gltI-sroC-gltJKL FlhDC view
  gltJ glutamate / aspartate ABC transporter - membrane subunit gltI-sroC-gltJKL FlhDC view
  gltK glutamate / aspartate ABC transporter - membrane subunit gltI-sroC-gltJKL FlhDC view
  gltL glutamate / aspartate ABC transporter - ATP binding subunit gltI-sroC-gltJKL FlhDC view
  hydN putative electron transport protein HydN hydN-hypF FhlA , FlhDC view
  hypF hydrogenase maturation protein, carbamoyltransferase hydN-hypF Cra , FhlA , FlhDC view
  mdh malate dehydrogenase mdh ArcA , CRP , DpiA , FlhDC view
  mglA D-galactose / D-galactoside ABC transporter - ATP binding subunit mglBAC CRP , Fis , FlhDC , GalR , GalS view
  mglB D-galactose / D-galactoside ABC transporter - periplasmic binding protein mglBAC CRP , FlhDC , GalR , GalS view
  mglC D-galactose / D-galactoside ABC transporter - membrane subunit mglBAC CRP , Fis , FlhDC , GalR , GalS view
  napA large subunit of periplasmic nitrate reductase, molybdoprotein napFDAGHBC-ccmABCDEFGH FNR , FlhDC , IscR , ModE , NarL , NarP view
  napB subunit of periplasmic nitrate reductase, cytochrome c550 protein napFDAGHBC-ccmABCDEFGH FNR , FlhDC , IscR , ModE , NarL , NarP view
  napC periplasmic nitrate reductase, cytochrome c protein napFDAGHBC-ccmABCDEFGH FNR , FlhDC , IscR , ModE , NarL , NarP view
  napD signal peptide-binding chaperone for NapA napFDAGHBC-ccmABCDEFGH FNR , FlhDC , IscR , ModE , NarL , NarP view
  napF ferredoxin-type protein napFDAGHBC-ccmABCDEFGH FNR , FlhDC , IscR , ModE , NarL , NarP view
  napG ferredoxin-type protein napFDAGHBC-ccmABCDEFGH FNR , FlhDC , IscR , ModE , NarL , NarP view
  napH ferredoxin-type protein napFDAGHBC-ccmABCDEFGH FNR , FlhDC , IscR , ModE , NarL , NarP view
  nrfA formate-dependent nitrite reductase - NrfA subunit nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  nrfB formate-dependent nitrite reductase - penta-heme cytochrome c nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  nrfC formate-dependent nitrite reductase, 4Fe-4S subunit nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  nrfD formate-dependent nitrite reductase - NrfD subunit nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  nrfE formate-dependent nitrite reductase; possible assembly function nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  nrfF activator of formate-dependent nitrite reductase complex nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  nrfG NrfG nrfABCDEFG FNR , Fis , FlhDC , IHF , NarL , NarP , NsrR view
  pdeH c-di-GMP phosphodiesterase pdeH FlhDC view
  ppdA conserved protein ppdAB-ygdB-ppdC-recC FlhDC view
  ppdB conserved protein ppdAB-ygdB-ppdC-recC FlhDC view
  ppdC putative protein ppdAB-ygdB-ppdC-recC FlhDC nd
  recC RecC ppdAB-ygdB-ppdC-recC FlhDC view
  sroC SroC gltI-sroC-gltJKL FlhDC nd
  tcyJ cystine/cysteine ABC transporter - periplasmic binding protein fliAZ-tcyJ CsgD , CysB , FlhDC , MatA , NsrR , SutR view
  ycgR molecular brake that regulates flagellar motility in response to c-di-GMP ycgR FlhDC view
  yecR putative protein yecR FNR , FlhDC view
  ygbK conserved protein ygbJK FlhDC nd
  ygdB putative protein ppdAB-ygdB-ppdC-recC FlhDC nd
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