RegulonDB RegulonDB 10.8:Coexpression
   


Gene Coexpression in Escherichia coli K-12 genome


 

This section aims to give an overview of different features that are known about the query genes, such as their transcriptional regulation, their gene product, the operon to which they belong and the description of gene ontologies they are associated to. In the case one or more of the input genes are not found in our database, they will appear under the section "gene (s) not found". The table can be sorted by any of the features by clicking icon attached to the name of the feature´s associated column.

Query size: 60 gene(s)


  Gene name Product Operon Gene regulation GOs list
  adiC AdiC arginine:agmatine antiporter adiC PhoB view
  amn AMP nucleosidase amn PhoB view
  argP ArgP transcriptional activator argP ArgP , PhoB view
  asr acid shock protein asr PhoB , RcdA , RstA view
  cra Cra DNA-binding transcriptional dual regulator cra PhoB view
  cusA copper / silver exporter - membrane subunit cusCFBA CusR , PhoB , YedW view
  cusB copper / silver exporter - membrane fusion protein cusCFBA CusR , PhoB , YedW view
  cusC copper / silver exporter - outer membrane porin cusCFBA CusR , PhoB , YedW view
  cusF copper / silver exporter - periplasmic binding protein and metallochaperone cusCFBA CusR , PhoB , YedW view
  cusR CusR transcriptional activator cusRS CusR , PhoB , YedW view
  cusS CusS sensory histidine kinase cusRS CusR , PhoB , YedW view
  eda multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase edd-eda Cra , GntR , KdgR , PhoB view
  feaR FeaR DNA-binding transcriptional activator feaR CRP , Nac , NsrR , PhoB view
  gadW GadW DNA-binding transcriptional dual regulator gadAXW FNR , GadE , GadW , GadX , PhoB , PhoP , RutR , SdiA , YdeO view
  gadX GadX DNA-binding transcriptional dual regulator gadAXW AdiY , ArcA , CRP , FNR , Fis , GadE , GadW , GadX , PhoB , RcsB , RutR , TorR view
  yedX hydroxyisourate hydrolase / transthyretin-related protein yedX CusR , PhoB , YedW view
  mipA scaffolding protein that interacts with murein polymerase and murein hydrolase mipA PhoB view
  ompF outer membrane porin F ompF CRP , CpxR , EnvY , Fur , IHF , OmpR , PhoB , RstA view
  phnC phosphonate ABC transporter - ATP binding subunit phnCDE_1E_2FGHIJKLMNOP PhoB view
  phnD phosphonate ABC transporter - periplasmic binding protein phnCDE_1E_2FGHIJKLMNOP PhoB view
  phnE_1 phosphonate ABC transporter - membrane subunit phnCDE_1E_2FGHIJKLMNOP PhoB view
  phnF PhnF predicted transcriptional regulator phnCDE_1E_2FGHIJKLMNOP PhoB view
  phnG carbon-phosphorus lyase core complex, PhnG subunit phnCDE_1E_2FGHIJKLMNOP PhoB view
  phnH carbon-phosphorus lyase core complex, PhnH subunit phnCDE_1E_2FGHIJKLMNOP PhoB view
  phnI carbon-phosphorus lyase core complex, PhnI subunit phnCDE_1E_2FGHIJKLMNOP PhoB view
  phnJ carbon-phosphorus lyase core complex, PhnJ subunit phnCDE_1E_2FGHIJKLMNOP PhoB view
  phnK predicted carbon-phosphorus lyase subunit phnCDE_1E_2FGHIJKLMNOP PhoB view
  phnL PhnL subunit of methylphosphonate degradation complex phnCDE_1E_2FGHIJKLMNOP PhoB view
  phnM RPnTP hydrolase phnCDE_1E_2FGHIJKLMNOP PhoB view
  phnN ribose 1,5-bisphosphokinase phnCDE_1E_2FGHIJKLMNOP PhoB view
  phnO aminoalkylphosphonate N-acetyltransferase phnCDE_1E_2FGHIJKLMNOP PhoB view
  phnP 5-phospho-α-D-ribosyl 1,2-cyclic phosphate phosphodiesterase phnCDE_1E_2FGHIJKLMNOP PhoB view
  phoA alkaline phosphatase phoA-psiF PhoB view
  phoB PhoB transcriptional dual regulator phoBR PhoB view
  phoE outer membrane porin E phoE PhoB view
  phoH ATP-binding protein phoH PhoB view
  phoQ PhoQ sensory histidine kinase phoPQ PhoB , PhoP view
  phoR PhoR phoBR PhoB view
  phoU negative regulator of the pho regulon pstSCAB-phoU FNR , IHF , PhoB view
  pitB metal phosphate:H+ symporter PitB pitB PhoB view
  prpR PrpR DNA-binding transcriptional dual regulator prpR AscG , CRP , PhoB , PrpR view
  psiE predicted phosphate starvation-inducible protein psiE CRP , PhoB view
  psiF conserved protein phoA-psiF PhoB nd
  pstA phosphate ABC transporter - membrane subunit pstSCAB-phoU FNR , IHF , PhoB view
  pstB phosphate ABC transporter - ATP binding subunit pstSCAB-phoU FNR , IHF , PhoB view
  pstC phosphate ABC transporter - membrane subunit pstSCAB-phoU FNR , IHF , PhoB view
  pstS phosphate ABC transporter - periplasmic binding protein pstSCAB-phoU FNR , IHF , PhoB view
  sbcC ATP dependent, structure specific DNA nuclease - SbcC subunit sbcDC PhoB view
  sbcD ATP dependent, structure specific DNA nuclease - SbcD subunit sbcDC PhoB view
  tktB transketolase II talA-tktB PhoB view
  ugpA glycerol-3-phosphate ABC transporter - membrane subunit ugpBAECQ CRP , PhoB view
  ugpB glycerol-3-phosphate ABC transporter - periplasmic binding protein ugpBAECQ CRP , PhoB view
  ugpC glycerol-3-phosphate ABC transporter - ATP binding subunit ugpBAECQ CRP , PhoB view
  ugpE glycerol-3-phosphate ABC transporter - membrane subunit ugpBAECQ CRP , PhoB view
  ugpQ glycerophosphodiester phosphodiesterase, cytosolic ugpBAECQ CRP , PhoB view
  waaH UDP-glucuronate:LPS(HepIII) glycosyltransferase waaH NsrR , PhoB view
  ydfH YdfH DNA-binding transcriptional repressor ydfH PhoB view
  yegH inner membrane protein YegH yegH PhoB view
  yhjC predicted DNA-binding transcriptional regulator yhjC PhoB view
  ytfK conserved protein ytfK nd nd
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