| |
Gene name |
Product |
Operon |
Gene regulation |
GOs list |
| |
alaT
|
tRNAalaT
|
rrsA-ileT-alaT-rrlA-rrfA
|
Fis
,
Lrp
|
nd
|
| |
alaU
|
tRNAalaU
|
rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF
|
Fis
,
Lrp
|
nd
|
| |
alaV
|
tRNAalaV
|
rrsH-ileV-alaV-rrlH-rrfH
|
Fis
,
Lrp
|
nd
|
| |
argI
|
ornithine carbamoyltransferase chain I
|
argI
|
ArgR
|
view
|
| |
argS
|
arginine-tRNA ligase
|
argS
|
nd
|
view
|
| |
argT
|
lysine / arginine / ornithine ABC transporter - periplasmic binding protein
|
argT-hisJQMP
|
NtrC
|
view
|
| |
argX
|
tRNAargX
|
argX-hisR-leuT-proM
|
Fis
|
nd
|
| |
bolA
|
BolA DNA-binding transcriptional dual regulator
|
bolA
|
OmpR
|
view
|
| |
cfa
|
cyclopropane fatty acyl phospholipid synthase
|
cfa
|
nd
|
view
|
| |
crp
|
CRP transcriptional dual regulator
|
crp
|
CRP
,
Cra
,
Fis
|
view
|
| |
csgD
|
CsgD DNA-binding transcriptional dual regulator
|
csgDEFG
|
BasR
,
CRP
,
CpxR
,
Cra
,
CsgD
,
FliZ
,
IHF
,
MlrA
,
MqsA
,
OmpR
,
RcdA
,
RcsAB
,
RstA
|
view
|
| |
csgE
|
curli transport specificity factor
|
csgDEFG
|
BasR
,
CRP
,
CpxR
,
Cra
,
CsgD
,
FliZ
,
IHF
,
MlrA
,
MqsA
,
OmpR
,
RcdA
,
RcsAB
,
RstA
|
view
|
| |
csgF
|
curli assembly component
|
csgDEFG
|
BasR
,
CRP
,
CpxR
,
Cra
,
CsgD
,
FliZ
,
IHF
,
MlrA
,
MqsA
,
OmpR
,
RcdA
,
RcsAB
,
RstA
|
view
|
| |
csgG
|
curli secretion channel
|
csgDEFG
|
BasR
,
CRP
,
CpxR
,
Cra
,
CsgD
,
FliZ
,
IHF
,
MlrA
,
MqsA
,
OmpR
,
RcdA
,
RcsAB
,
RstA
|
view
|
| |
cspA
|
CspA DNA-binding transcriptional activator
|
cspA
|
Fis
|
view
|
| |
cspD
|
DNA replication inhibitor
|
cspD
|
CRP
,
MqsA
|
view
|
| |
dksA
|
RNA polymerase-binding transcription factor DksA
|
sfsA-dksA-gluQ
|
CRP
|
view
|
| |
dnaA
|
chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator
|
dnaAN-recF
|
ArgP
,
DnaA
|
view
|
| |
dnaN
|
DNA polymerase III, β subunit
|
dnaAN-recF
|
ArgP
,
DnaA
|
view
|
| |
dusB
|
tRNA-dihydrouridine synthase B
|
dusB-fis
|
CRP
,
Fis
,
IHF
|
view
|
| |
efp
|
protein chain elongation factor EF-P
|
efp
|
nd
|
view
|
| |
fadD
|
fatty acyl-CoA synthetase
|
fadD-sroD
|
ArcA
,
CRP
,
FadR
|
view
|
| |
fadL
|
long-chain fatty acid outer membrane porin; bacteriophage T2 receptor
|
fadL
|
ArcA
,
CRP
,
FadR
,
OmpR
,
PhoP
|
view
|
| |
fimB
|
regulator for fimA
|
fimB
|
BasR
,
IHF
,
NagC
,
NanR
|
view
|
| |
fis
|
Fis DNA-binding transcriptional dual regulator
|
dusB-fis
|
CRP
,
Fis
,
IHF
|
view
|
| |
fkpA
|
peptidyl-prolyl cis-trans isomerase; in protein folding
|
fkpA
|
nd
|
view
|
| |
flu
|
CP4-44 prophage; antigen 43 (Ag43) phase-variable biofilm formation autotransporter
|
isrC-flu
|
OxyR
|
view
|
| |
folK
|
6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase
|
pcnB-folK
|
nd
|
view
|
| |
frr
|
ribosome recycling factor
|
frr
|
nd
|
view
|
| |
ftsA
|
essential cell division protein FtsA
|
mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC
|
LexA
,
MraZ
,
PdhR
,
RcsB
,
SdiA
|
view
|
| |
ftsK
|
essential cell division protein FtsK
|
ftsK
|
LexA
|
view
|
| |
ftsQ
|
essential cell division protein FtsQ
|
mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC
|
LexA
,
MraZ
,
PdhR
,
SdiA
|
view
|
| |
ftsZ
|
essential cell division protein FtsZ
|
mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC
|
LexA
,
MraZ
,
PdhR
,
RcsB
,
SdiA
|
view
|
| |
gabD
|
succinate-semialdehyde dehydrogenase (NADP+)
|
csiD-lhgO-gabDTP
|
CRP
,
CsiR
,
Lrp
,
Nac
|
view
|
| |
gabP
|
4-aminobutyrate:H+ symporter
|
csiD-lhgO-gabDTP
|
CRP
,
CsiR
,
Lrp
,
Nac
|
view
|
| |
gabT
|
4-aminobutyrate aminotransferase
|
csiD-lhgO-gabDTP
|
CRP
,
CsiR
,
Lrp
,
Nac
|
view
|
| |
gadA
|
glutamate decarboxylase A subunit
|
gadAXW
|
AdiY
,
ArcA
,
CRP
,
FNR
,
Fis
,
GadW
,
GadX
,
RcsB
,
TorR
|
view
|
| |
gadX
|
GadX DNA-binding transcriptional dual regulator
|
gadAXW
|
AdiY
,
ArcA
,
CRP
,
FNR
,
Fis
,
GadE
,
GadW
,
GadX
,
PhoB
,
RcsB
,
RutR
,
TorR
|
view
|
| |
csiD
|
putative protein
|
csiD-lhgO-gabDTP
|
CRP
,
CsiR
,
Lrp
|
view
|
| |
glgA
|
glycogen synthase
|
glgBXCAP
|
CRP
,
PhoP
|
view
|
| |
glgC
|
glucose-1-phosphate adenylyltransferase
|
glgBXCAP
|
CRP
,
PhoP
|
view
|
| |
glgP
|
glycogen phosphorylase
|
glgBXCAP
|
CRP
,
PhoP
|
view
|
| |
glnU
|
tRNAGln1
|
metT-leuW-glnUW-metU-glnVX
|
Fis
|
nd
|
| |
glnV
|
tRNAGln2
|
metT-leuW-glnUW-metU-glnVX
|
Fis
|
nd
|
| |
glnW
|
tRNAGln1
|
metT-leuW-glnUW-metU-glnVX
|
Fis
|
nd
|
| |
glnX
|
tRNAGln2
|
metT-leuW-glnUW-metU-glnVX
|
Fis
|
nd
|
| |
ybaS
|
glutaminase
|
ybaST
|
GadX
|
view
|
| |
gltT
|
tRNAgltT
|
rrsB-gltT-rrlB-rrfB
|
Fis
,
Lrp
|
nd
|
| |
gltU
|
tRNAgltU
|
rrsC-gltU-rrlC-rrfC
|
Fis
,
Lrp
|
nd
|
| |
gltV
|
tRNAgltV
|
rrsE-gltV-rrlE-rrfE
|
Fis
,
Lrp
|
nd
|
| |
gltW
|
tRNAgltW
|
rrsG-gltW-rrlG-rrfG
|
Fis
,
Lrp
|
nd
|
| |
gluQ
|
glutamyl-Q tRNAAsp synthetase
|
sfsA-dksA-gluQ
|
nd
|
view
|
| |
glyT
|
tRNAglyT
|
thrU-tyrU-glyT-thrT-tufB
|
Fis
|
nd
|
| |
grxB
|
reduced glutaredoxin 2
|
grxB
|
nd
|
view
|
| |
hisJ
|
histidine ABC transporter - periplasmic binding protein
|
argT-hisJQMP
|
ArgR
,
NtrC
|
view
|
| |
hisM
|
lysine/arginine/ornithine ABC transporter / histidine ABC transporter - membrane subunit
|
argT-hisJQMP
|
ArgR
,
NtrC
|
view
|
| |
hisP
|
lysine/arginine/ornithine ABC transporter / histidine ABC transporter - ATP binding subunit
|
argT-hisJQMP
|
ArgR
,
NtrC
|
view
|
| |
hisQ
|
lysine/arginine/ornithine ABC transporter / histidine ABC transporter - membrane subunit
|
argT-hisJQMP
|
ArgR
,
NtrC
|
view
|
| |
hisR
|
tRNAhisR
|
argX-hisR-leuT-proM
|
Fis
|
nd
|
| |
hmp
|
nitric oxide dioxygenase
|
hmp
|
FNR
,
Fur
,
MetR
,
NsrR
|
view
|
| |
hns
|
H-NS DNA-binding transcriptional dual regulator
|
hns
|
CspA
,
Fis
,
GadX
|
view
|
| |
ileT
|
tRNAileT
|
rrsA-ileT-alaT-rrlA-rrfA
|
Fis
,
Lrp
|
nd
|
| |
ileU
|
tRNAileU
|
rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF
|
Fis
,
Lrp
|
nd
|
| |
ileV
|
tRNAileV
|
rrsH-ileV-alaV-rrlH-rrfH
|
Fis
,
Lrp
|
nd
|
| |
ilvA
|
threonine deaminase
|
ilvLXG_1G_2MEDA
|
IHF
,
Lrp
|
view
|
| |
ilvB
|
acetohydroxy acid synthase I, large subunit
|
ivbL-ilvBN-uhpABC
|
CRP
|
view
|
| |
ilvD
|
dihydroxy acid dehydratase
|
ilvLXG_1G_2MEDA
|
IHF
,
Lrp
|
view
|
| |
ilvE
|
branched-chain amino-acid aminotransferase
|
ilvLXG_1G_2MEDA
|
IHF
,
Lrp
|
view
|
| |
ilvG_1
|
acetolactate synthase II, large subunit, N-ter fragment (pseudogene)
|
ilvLXG_1G_2MEDA
|
IHF
,
Lrp
|
view
|
| |
ilvH
|
acetolactate synthase / acetohydroxybutanoate synthase, regulatory subunit
|
ilvIH
|
Lrp
|
view
|
| |
ilvI
|
acetolactate synthase / acetohydroxybutanoate synthase, catalytic subunit
|
ilvIH
|
Lrp
|
view
|
| |
ilvL
|
ilvGEDA operon leader peptide
|
ilvLXG_1G_2MEDA
|
IHF
,
Lrp
|
view
|
| |
ilvM
|
acetolactate synthase / acetohydroxybutanoate synthase, regulatory subunit
|
ilvLXG_1G_2MEDA
|
IHF
,
Lrp
|
view
|
| |
ilvN
|
acetohydroxy acid synthase I, small subunit
|
ivbL-ilvBN-uhpABC
|
CRP
|
view
|
| |
ilvX
|
small protein
|
ilvLXG_1G_2MEDA
|
IHF
,
Lrp
|
nd
|
| |
iraD
|
anti-adaptor protein IraD, inhibitor of σS proteolysis
|
iraD
|
FNR
|
view
|
| |
iraP
|
anti-adaptor protein for σS stabilization
|
iraP
|
CsgD
|
view
|
| |
isrC
|
IsrC
|
isrC-flu
|
OxyR
|
nd
|
| |
ivbL
|
ilvB operon leader peptide
|
ivbL-ilvBN-uhpABC
|
CRP
|
view
|
| |
leuA
|
2-isopropylmalate synthase
|
leuLABCD
|
LeuO
|
view
|
| |
leuB
|
3-isopropylmalate dehydrogenase
|
leuLABCD
|
LeuO
|
view
|
| |
leuC
|
LeuC
|
leuLABCD
|
LeuO
|
view
|
| |
leuD
|
LeuD
|
leuLABCD
|
LeuO
|
view
|
| |
leuL
|
leu operon leader peptide
|
leuLABCD
|
LeuO
|
view
|
| |
leuO
|
LeuO DNA-binding transcriptional dual regulator
|
leuO
|
LeuO
,
StpA
|
view
|
| |
leuT
|
tRNAleuT
|
argX-hisR-leuT-proM
|
Fis
|
nd
|
| |
leuW
|
tRNAleuW
|
metT-leuW-glnUW-metU-glnVX
|
Fis
|
nd
|
| |
leuX
|
tRNAleuX
|
leuX
|
Fis
|
nd
|
| |
lhgO
|
L-2-hydroxyglutarate oxidase
|
csiD-lhgO-gabDTP
|
CRP
,
CsiR
,
Lrp
|
view
|
| |
livJ
|
branched chain amino acid / phenylalanine ABC transporter - periplasmic binding protein
|
livJ
|
Lrp
|
view
|
| |
lrp
|
Lrp transcriptional dual regulator
|
lrp
|
GadE
,
Lrp
,
NsrR
|
view
|
| |
mazE
|
MazE antitoxin of the MazF-MazE toxin-antitoxin system
|
relA-mazEFG
|
CRP
,
Fis
,
HipAB
,
HipB
,
MazE
|
view
|
| |
mazF
|
MazF toxin of the MazF-MazE toxin-antitoxin system that exhibits ribonuclease activity
|
relA-mazEFG
|
CRP
,
Fis
,
HipAB
,
HipB
,
MazE
|
view
|
| |
mazG
|
nucleoside triphosphate pyrophosphohydrolase
|
relA-mazEFG
|
Fis
,
MazE
|
view
|
| |
metT
|
tRNAmetT
|
metT-leuW-glnUW-metU-glnVX
|
Fis
|
nd
|
| |
metU
|
tRNAmetU
|
metT-leuW-glnUW-metU-glnVX
|
Fis
|
nd
|
| |
metV
|
tRNAfMet1
|
metZWV
|
nd
|
view
|
| |
metW
|
tRNAfMet1
|
metZWV
|
nd
|
nd
|
| |
metZ
|
tRNAfMet1
|
metZWV
|
nd
|
nd
|
| |
mioC
|
flavoprotein involved in biotin synthesis
|
asnC-mioC-mnmG-rsmG
|
AsnC
,
MraZ
,
Nac
|
view
|
| |
mnmG
|
protein involved in modification of U34 in tRNA
|
asnC-mioC-mnmG-rsmG
|
AsnC
,
Nac
|
view
|
| |
pcnB
|
poly(A) polymerase I
|
pcnB-folK
|
nd
|
view
|
| |
pnp
|
polynucleotide phosphorylase
|
metY-rimP-nusA-infB-rbfA-truB-rpsO-pnp
|
ArgR
,
CRP
,
Fis
|
view
|
| |
proM
|
tRNAproM
|
argX-hisR-leuT-proM
|
Fis
|
nd
|
| |
pyrB
|
aspartate carbamoyltransferase, PyrB subunit
|
pyrLBI
|
nd
|
view
|
| |
pyrI
|
aspartate carbamoyltransferase, PyrI subunit
|
pyrLBI
|
nd
|
view
|
| |
pyrL
|
Pyr operon leader peptide
|
pyrLBI
|
nd
|
view
|
| |
qor
|
quinone oxidoreductase
|
qor
|
nd
|
view
|
| |
queA
|
S-adenosylmethionine:tRNA ribosyltransferase-isomerase
|
queA
|
Fis
|
view
|
| |
recF
|
ssDNA and dsDNA binding, ATP binding
|
dnaAN-recF
|
ArgP
,
DnaA
|
view
|
| |
relA
|
GDP pyrophosphokinase/GTP pyrophosphokinase
|
relA-mazEFG
|
CRP
,
HipAB
,
HipB
,
NtrC
|
view
|
| |
rmf
|
ribosome modulation factor
|
rmf
|
CRP
|
view
|
| |
rpmE
|
50S ribosomal subunit protein L31
|
rpmE
|
nd
|
view
|
| |
rpoE
|
RNA polymerase, sigma 24 (sigma E) factor
|
rpoE-rseABC
|
CRP
,
CpxR
,
GlrR
,
IHF
,
NtrC
,
RcsB
|
view
|
| |
rpoS
|
RNA polymerase, sigma S (sigma 38) factor
|
nlpD-rpoS
|
ArcA
,
CRP
,
Fur
,
GadX
,
MqsA
|
view
|
| |
rpsB
|
30S ribosomal subunit protein S2
|
tff-rpsB-tsf
|
nd
|
view
|
| |
rpsO
|
30S ribosomal subunit protein S15
|
metY-rimP-nusA-infB-rbfA-truB-rpsO-pnp
|
ArgR
,
CRP
,
Fis
|
view
|
| |
rrfA
|
5S ribosomal RNA (rrfA)
|
rrsA-ileT-alaT-rrlA-rrfA
|
Fis
,
Lrp
|
nd
|
| |
rrfB
|
rrfB 5S ribosomal RNA
|
rrsB-gltT-rrlB-rrfB
|
Fis
,
Lrp
|
view
|
| |
rrfC
|
rrfC 5S ribosomal RNA
|
rrsC-gltU-rrlC-rrfC
|
Fis
,
Lrp
|
view
|
| |
rrfD
|
rrfD 5S ribosomal RNA
|
rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF
|
Fis
,
Lrp
|
view
|
| |
rrfE
|
rrfE 5S ribosomal RNA
|
rrsE-gltV-rrlE-rrfE
|
Fis
,
Lrp
|
view
|
| |
rrfF
|
rrfF 5S ribosomal RNA
|
rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF
|
Fis
,
Lrp
|
view
|
| |
rrfG
|
rrfG 5S ribosomal RNA
|
rrsG-gltW-rrlG-rrfG
|
Fis
,
Lrp
|
view
|
| |
rrfH
|
rrfH 5S ribosomal RNA
|
rrsH-ileV-alaV-rrlH-rrfH
|
Fis
,
Lrp
|
view
|
| |
rrlA
|
23S ribosomal RNA (rrlA)
|
rrsA-ileT-alaT-rrlA-rrfA
|
Fis
,
Lrp
|
nd
|
| |
rrlB
|
rrlB 23S ribosomal RNA
|
rrsB-gltT-rrlB-rrfB
|
Fis
,
Lrp
|
view
|
| |
rrlC
|
rrlC 23S ribosomal RNA
|
rrsC-gltU-rrlC-rrfC
|
Fis
,
Lrp
|
view
|
| |
rrlD
|
rrlD 23S ribosomal RNA
|
rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF
|
Fis
,
Lrp
|
view
|
| |
rrlE
|
rrlE 23S ribosomal RNA
|
rrsE-gltV-rrlE-rrfE
|
Fis
,
Lrp
|
view
|
| |
rrlG
|
rrlG 23S ribosomal RNA
|
rrsG-gltW-rrlG-rrfG
|
Fis
,
Lrp
|
view
|
| |
rrlH
|
rrlH 23S ribosomal RNA
|
rrsH-ileV-alaV-rrlH-rrfH
|
Fis
,
Lrp
|
view
|
| |
rrsA
|
16S ribosomal RNA (rrsA)
|
rrsA-ileT-alaT-rrlA-rrfA
|
Fis
,
Lrp
|
nd
|
| |
rrsB
|
rrsB 16S ribosomal RNA
|
rrsB-gltT-rrlB-rrfB
|
Fis
,
Lrp
|
view
|
| |
rrsC
|
rrsC 16S ribosomal RNA
|
rrsC-gltU-rrlC-rrfC
|
Fis
,
Lrp
|
view
|
| |
rrsD
|
rrsD 16S ribosomal RNA
|
rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF
|
Fis
,
Lrp
|
view
|
| |
rrsE
|
rrsE 16S ribosomal RNA
|
rrsE-gltV-rrlE-rrfE
|
Fis
,
Lrp
|
view
|
| |
rrsG
|
rrsG 16S ribosomal RNA
|
rrsG-gltW-rrlG-rrfG
|
Fis
,
Lrp
|
view
|
| |
rrsH
|
rrsH 16S ribosomal RNA
|
rrsH-ileV-alaV-rrlH-rrfH
|
Fis
,
Lrp
|
view
|
| |
rseA
|
anti-sigma factor
|
rpoE-rseABC
|
CRP
,
CpxR
,
GlrR
,
IHF
,
NtrC
,
RcsB
|
view
|
| |
rseB
|
rseB
|
rpoE-rseABC
|
CRP
,
CpxR
,
GlrR
,
IHF
,
NtrC
,
RcsB
|
view
|
| |
rseC
|
protein RseC
|
rpoE-rseABC
|
CRP
,
CpxR
,
GlrR
,
IHF
,
NtrC
,
RcsB
|
view
|
| |
rsmG
|
16S rRNA m7G527 methyltransferase
|
asnC-mioC-mnmG-rsmG
|
nd
|
| |
PREV