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Name: | Sigma28      Signal transduction |
Synonyms: | FliA |
Gene name: | fliA |
Sigmulon regulators: | |
Sigmulon Genes: |
aer, cheA, cheB, cheR, cheW, cheY, cheZ, flgK, flgL, flgM, flgN, fliA, fliC, fliD, fliE, fliF, fliG, fliH, fliI, fliJ,
fliK, fliL, fliM, fliN, fliO, fliP, fliQ, fliR, fliS, fliT, fliZ, flxA, hemL, ispE, lolB, modA, modB, modC, motA, motB, oppA, oppB, oppC, oppD, oppF, pdeH, ppdA, ppdB, ppdC, prs, rdcA, rdcB, recC, tap, tar, tcyJ, trg, tsr, ves, yafW, yafX, ycgR, yecF, ygbK, ygdB, yhiL, yjcS, ykfB, ykfF, ykfG, ykfH, ykfI, ynjH |
Transcribed promoters | ![]() |
---|
Promoter Name | TSS Position | Transcribed Gene(s) | Distance from TSS to gene |
Promoter Sequence |
Box (-10) |
Box (-35) |
Evidence Code(s) | Reference(s) | |
---|---|---|---|---|---|---|---|---|---|
aerp | 3219120 | aer | 44 | aattgcgatctaaatcaaattaatcggttaaagataaccgcagcggggccgacataaactCtgacaagaagttaacaacca -35 -10 +1 |
GCCGACAT | TAAAG | [APIORCISFBSCS] [HIPP] [ICWHO] [IHBCE] [IMP] [TIM] |
[1] [2] [3] [4] |
|
flgKp | 1138351 | flgK, flgL | 27 | gaacattgataatctgttctgaataactcaagtccggcgggtcgctgccgataatactctGtaattgaaggcttataagga -35 -10 +1 |
GCCGATAA | TCAAG | [APIORCISFBSCS] [HIPP] [ICWHO] [IDA] |
[5] [1] [3] [6] [7] [8] [4] |
|
flgMp | 1130165 | flgN, flgM | 37 | gaatattcttataaacctgtaagctgttaaagattacccgtcccttgccgataaataagcAacacatgataaaagcgccct -35 -10 +1 |
GCCGATAA | TAAAG | [APIORCISFBSCS] [HIPP] [ICWHO] [IDA] |
[1] [3] [6] [7] [4] |
|
fliAp2 | 2001808 | tcyJ, fliZ, fliA | 19 | acccactaatcgtccgattaaaaaccctgcagaaacggataatcatgccgataactcataTaacgcagggctgtttatcgt -35 -10 +1 |
GCCGATAA | TGCAG | [APIORCISFBSCS] [HIPP] [ICWHO] [IDA] [TIM] |
[3] [6] [9] [10] [4] |
|
fliCp | 2003676 | fliC | 70 | aaaaatggctgtttttgaaaaaaattctaaaggttgttttacgacagacgataacagggtTgacggcgattgagccgacgg -35 -10 +1 |
GACGATAA | TAAAG | [APIORCISFBSCS] [HIPP] [ICWHO] [IDA] [RPF] |
[1] [11] [12] [3] [6] [13] [8] [4] |
|
fliDp1 | null | fliD, fliS, fliT | [APIORCISFBSCS] [HIPP] [RPF] |
[1] [12] [6] [7] [8] [4] |
|||||
fliEp2 | 2013093 | fliE | 79 | gaaaaattgacgctcccattatttgtgctttcgtttttttctatccgccaataaacccgtTtttttgttgctatttagcgc -35 -10 +1 |
GCCAATAA | TGCTT | [APIORCISFBSCS] [HIPP] [ICWHO] |
[3] [14] |
|
fliFp2 | 2013205 | fliF, fliG, fliH, fliI, fliJ, fliK | 24 | caatttttcgagtttgctgacccgggagtgagtcttgttccactttgccaataacgccgtCcataatcagccacgaggtgc -35 -10 +1 |
GCCAATAA | GAGTG | [APIORCISFBSCS] [HIPP] [ICWHO] |
[3] [14] |
|
fliLp2 | 2019595 | fliL, fliM, fliN, fliO, fliP, fliQ, fliR | 23 | ccgcgtcttttccccgctttgttgcgctcaagacgcaggataattagccgataagcagtaGcgacacaggaagaccgcaac -35 -10 +1 |
GCCGATAA | TCAAG | [APIORCISFBSCS] [HIPP] [ICWHO] [IDA] [TIM] |
[15] [1] [12] [3] [6] [9] |
|
flxAp | 1646388 | flxA | 17 | aacaattaatgacacaagaaatacgattaaagatttttttgtgcatgccgatagtgctttTttaaaaggagaaatctatgt -35 -10 +1 |
GCCGATAG | TAAAG | [AIBSCS] [AIPP] [HIPP] [ICWHO] |
[3] [16] [4] [17] |
|
hemLp | 174921 | hemL | 39 | gcaccagtacaagcagcctgatgtttgacgagtatttaacttgttatgaataacatagaaTagcagccattcactttttct -35 -10 +1 |
ATGAATAA | TGACG | [ICWHO] [IEP] [TIM] |
[3] [18] [17] |
|
hemLp1 | 174902 | hemL | 20 | gatgtttgacgagtatttaacttgttatgaataacatagaatagcagccattcactttttCtacgaatcaggaaccctcca -35 -10 +1 |
GCCATTCA | TGAAT | [HIPP] [ICWHO] [IEP] |
[3] [17] |
|
hemLp2 | 174941 | hemL | 59 | tactctaagaaatcaggattgcaccagtacaagcagcctgatgtttgacgagtatttaacTtgttatgaataacatagaat -35 -10 +1 |
GACGAGTA | TACAA | [HIPP] [ICWHO] [IEP] [IHBCE] |
[3] [17] |
|
lolBp | 1263556 | prs, ispE, lolB | 56 | ttgccgaaagccgttagattctggcaattaagacaacttgaacatagacgatagcggacgGtaacgctagcattaagggtt -35 -10 +1 |
GACGATAG | TTAAG | [HIPP] [ICWHO] |
[19] [3] [20] |
|
modAp1 | 794995 | modA, modB, modC | 94 | ccgcttagtcgggcattttctttttctcaacttcctgcttttcctgccgatattttttctTatctacctcacaaaggttag -35 -10 +1 |
GCCGATAT | TCAAC | [AIBSCS] [AIPP] [HIPP] [ICWHO] [IEP] [IHBCE] |
[3] [21] [17] |
|
motAp | 1977302 | cheW, cheA, motB, motA | 163 | accgccatcccgggcagtaaaaagacgtaaactttcccagaatcctgccgatattatcccAcaactgctggatgaacagag -35 -10 +1 |
GCCGATAT | TAAAC | [APIORCISFBSCS] [HIPP] [ICWHO] |
[3] [6] [7] [4] |
|
oppAp | 1301085 | oppA, oppB, oppC, oppD, oppF | 97 | atcgtctgaatcaccagaataaataaagtcggtgatagtaatacgtaacgataaagtaacCtgacagcagaaagtctccga -35 -10 +1 |
AACGATAA | AGTCG | [AIPP] [ICWHO] [NTAS] |
[22] [23] [19] [3] |
|
ppdAp | 2964220 | recC, ppdC, ygdB, ppdB, ppdA | 43 | gaaattttgcaacgtcctgcaacggcgtaaatagtccggaagatgcgccgaagaaatagaAactggccctcgtcttttttt -35 -10 +1 |
GCCGAAGA | TAAAT | [APIORCISFBSCS] [HIPP] [ICWHO] |
[3] [4] |
|
rdcAp1 | 4327079 | rdcA, rdcB | 56 | aaacaacacactaaatataaaattatttcttgcagtaattataaaagccgaaaacagaacTcaaaaacaatctggctaaat -35 -10 +1 |
GCCGAAAA | TCTTG | [HIPP] [ICWHO] [IHBCE] |
[3] [17] |
|
rdcAp2 | 4327064 | rdcA, rdcB | 71 | atttattctgataaaaaacaacacactaaatataaaattatttcttgcagtaattataaaAgccgaaaacagaactcaaaa -35 -10 +1 |
GCAGTAAT | TAAAT | [HIPP] [ICWHO] [IHBCE] |
[3] [17] |
|
tarp | 1972716 | cheZ, cheY, cheB, cheR, tap, tar | 25 | caatttcgcggcgggtggcatcagcaataaagtttcccccctccttgccgataacgagatCaacttgttttcaggaaggtg -35 -10 +1 |
GCCGATAA | TAAAG | [APIORCISFBSCS] [HIPP] [ICWHO] [TIM] |
[15] [12] [3] [6] [7] [8] [24] |
|
trgp | 1492439 | trg | 31 | tgtgacgcaaagaggtttttggtcataagtaattaccgtcaagtgccgatgactttctatCaggagtaaacctggacgaga -35 -10 +1 |
GCCGATGA | TAAGTAAT | [HIPP] [HTTIM] [IDA] [IHBCE] |
[12] [2] [25] |
|
tsrp2 | 4591633 | tsr | 24 | ctcggcgtaatctccgcgggatattcataaagtttttcctttccaggccgaaaatcttgcAtcggtccacaggaaagagaa -35 -10 +1 |
GCCGAAAA | TAAAG | [APIORCISFBSCS] [HIPP] [ICWHO] [TIM] |
[15] [1] [12] [3] [6] [7] [8] [4] |
|
vesp | 1824984 | ves | 47 | agttgtaaaaaaagcctgatcaccactaacgtaaatcacccgagttgccgataaccatccAcggttacctgaacgataaca -35 -10 +1 |
GCCGATAA | TAACG | [ICWHO] [IEP] [IHBCE] [TIM] |
[3] [26] [17] |
|
ycgRp | 1244556 | ycgR | 29 | catgtaaaaaatattcacgcatttgtattaagttttgttaactgtgaccgataaaccaaaGacagtttgtcagtcaggagt -35 -10 +1 |
ACCGATAA | TTAAG | [AIBSCS] [AIPP] [HIPP] [ICWHO] |
[3] [7] [17] |
|
yecFp | 1995717 | yecF | 101 | gataaaaatatttattggtcattatattaacgtattttatagcactgccgatatcacgctCaaaaaacaaccactgctatt -35 -10 +1 |
GCCGATAT | TAACG | [APIORCISFBSCS] [HIPP] [ICWHO] |
[3] [21] |
|
ygbKp | 2862197 | ygbK | 138 | cccgcattcagccgtcgatatttttgttaaggatcttggtctggttgccgatacagccaaAgccctgcacttcccgctgcc -35 -10 +1 |
GCCGATAC | TTAAG | [APIORCISFBSCS] [HIPP] [ICWHO] |
[3] [4] |
|
yhiLp | null | yhiL | [HIPP] [IHBCE] |
[21] | |||||
yhjHp | 3679229 | pdeH | 42 | gtgaggaaatttaccccggccaggcggtaaagttctgcccttacgcgccgataatctttgTcgagtccgggcagcatcact -35 -10 +1 |
GCCGATAA | TAAAG | [AIBSCS] [AIPP] [HIPP] [ICWHO] [IEP] |
[3] [7] [17] |
|
yjcSp | null | yjcS | [APIORCISFBSCS] [HIPP] |
[21] | |||||
ykfBp1 | 266158 | ykfI, yafW, ykfH, ykfG, yafX, ykfF, ykfB | 71 | ccaggaggtgacggacccgtataccaaagaaaaatactttgagtacgcccatgacggcaaActgatggggcagctactgat -35 -10 +1 |
GCCCATGA | AGAAA | [HIPP] [ICWHO] [IEP] [IHBCE] |
[3] [17] |
|
ykfBp2 | 266227 | ykfI, yafW, ykfH, ykfG, yafX, ykfF, ykfB | 140 | tatgcaggaaaaaaccgtccagccactgatgaatgcgctgtgtattgccgataacatcaaActggaataccaggaggtgac -35 -10 +1 |
GCCGATAA | TGATG | [HIPP] [ICWHO] [IEP] [IHBCE] |
[3] [17] |
|
ynjHp | 1842163 | ynjH | 28 | ataaccaaatgcgataactcagacgctaaagttttgccacccggctaccgttatcagtagCagagacaataacgttaagga -35 -10 +1 |
ACCGTTAT | TAAAG | [AIBSCS] [AIPP] [HIPP] [ICWHO] |
[3] [21] [17] |
|
ynjHp2 | 1842188 | ynjH | 53 | gcaaattaataacgagagtaatctcataaccaaatgcgataactcagacgctaaagttttGccacccggctaccgttatca -35 -10 +1 |
GACGCTAA | TAACC | [HIPP] [ICWHO] [IEP] [IHBCE] |
[3] [17] |
Evidence: | [APIORCISFBSCS] A person inferred or reviewed a computer inference of sequence function based on similarity to a consensus sequence. [HIPP] Human inference of promoter position [ICWHO] Inferred computationally without human oversight [IHBCE] Inferred by a human based on computational evidence [IMP] Inferred from mutant phenotype [TIM] Transcription initiation mapping [IDA] Inferred from direct assay [RPF] RNA polymerase footprinting [AIBSCS] Automated inference based on similarity to consensus sequences [AIPP] Automated inference of promoter position [IEP] Inferred from expression pattern [NTAS] Non-traceable author statement [HTTIM] High-throughput transcription initiation mapping |