RegulonDB RegulonDB 10.9: Sigmulon Form
   

Sigma38 Sigmulon in Escherichia coli K-12 genome




Sigma38 Signal transduction, see details.




Sigma Factor      
Name: Sigma38      Signal transduction
Synonyms: RpoS
Gene name: rpoS
Sigmulon regulators:
Sigmulon Genes:


Transcribed promoters    
  Promoter Name TSS Position Transcribed Gene(s) Distance from TSS
to gene		 Promoter Sequence Box
(-10) 		Box
(-35) 		Evidence Code(s) Reference(s)
  aceEp2 122969 aceE, aceF 48 aaagcgcggcaactaaacgtagaacctgtcttattgagctttccggcgagagttcaatggGacaggttccagaaaactcaa
                          -35              -10              +1                    		CCGGCGAGAGT CTGTCT [HTTIM]
[ICWHO]
[RS-EPT-CBR]
[TIM] 		[1]
[2]
[3]
[4]
  acsp 4287391 actP, yjcH, acs 20 atactaaacaaaactgccaatacccctacatttaacgcttatgccacatattattaacatCctacaaggagaacaaaagca
                               -35              -10         +1                    		ATATTATT TTTAACGCT [AIPP]
[HTTIM] 		[5]
[6]
[2]
  adap2 2310427 alkB, ada 22 aaaaattaaagcgcaagattgttggtttttgcgtgatggtgaccgggcagcctaaaggctAtccttaaccagggagctgat
                             -35                -10         +1                    		CAGCCTAAAGG TTGCGT [ICWHO]
[TIM] 		[1]
[7]
  adhEp 1298413 adhE 292 ttgttatctagttgtgcaaaacatgctaatgtagccaccaaatcatactacaatttattaActgttagctataatggcgaa
                         -35                -10             +1                    		CATACTACAAT GCTAAT [ICWHO]
[IMP]
[TIM] 		[8]
[1]
[9]
  adhEp2 1298309 adhE 188 tttgcaaaaatttgatttggatcacgtaatcagtacccagaagtgagtaatcttgcttacGccacctggaagtgacgcatt
                       -35                 -10              +1                    		GTGAGTAATCT CACGTA [HIPP]
[ICWHO]
[TIM] 		[8]
[1]
[9]
  adrAp 403687 dgcC 16 tacgaaaatggctcacccgaaatatcatacttctgcctttagctccgtctctataatttgGgaaaattgtttctgaatgtt
                               -35             -10          +1                    		GTCTCTATAAT TTCTGC [HIPP]
[ICWHO]
[TIM] 		[10]
[1]
[11]
  aidBp2 4414247 aidB 28 gataagaatgttttagcaatctctttctgtcatgaatccatggcagtgaccatactaatgGtgactgccattgatggaggg
                             -35              -10           +1                    		GTGACCATACT GTCATG [ICWHO]
[TIM] 		[1]
[12]
[13]
[14]
[15]
[16]
  aldBp 3756535 aldB 24 gctgtcgtaaagctgttaccgactggcgaagatttcgccagtcacgtctacccttgttatAcctcacaccgcaaggagacg
                          -35               -10             +1                    		ACGTCTACCCT GCGAAG [ICWHO]
[TIM] 		[1]
[17]
  alkAp2 2147559 alkA 19 tcgcgacaaccggaatatgaaagcaaagcgcagcgtctgaataacgtttatgctgaaagcGgatgaataaggagatgcgat
                           -35              -10             +1                    		ACGTTTATGCT AGCGCA [CV(RPF/RS-EPT-CBR)]
[ICWHO]
[RPF]
[RS-EPT-CBR] 		[1]
[18]
[19]
[3]
  ansPp1 1526011 ansP 31 gaataatggtgataactatcatcgccaggatgaataaacattgttcatggcaacttatatGactttttcattaaagcaatc
                              -35              -10          +1                    		ATGGCAACTTA ATGAAT [ICWHO]
[TIM] 		[1]
[20]
  ansPp2 1526020 ansP 40 acccataaagaataatggtgataactatcatcgccaggatgaataaacattgttcatggcAacttatatgactttttcatt
                               -35                -10       +1                    		TTGTTCATGGC TCGCCA [ICWHO]
[TIM] 		[1]
[20]
  appCp2 1037710 appC, appB, appX, appA 30 ggcgaatacctctggtcgtagagtttcaggataaagagggagatctaccattatcgggttAtttttctctcttcgcctaca
                        -35              -10                +1                    		AGATCTACCAT TTTCAG [HIPP]
[ICWHO] 		[21]
[22]
[23]
[1]
  appYp2 583656 appY 25 gcacatcatcctgattatgattgtgtatttaattggttgttatttgactactatcaacttGttttaattttatgataggtg
                                             -10            +1                    		TGACTACTATC   [HTTIM] [15]
  araFp2 1986148 araH, araG, araF 20 aatgctttgttttccgattaatttaacgaatgtcattcgtttttgccctacacaaaacgaCactaaagctggagagaacca
                                          -10               +1                    		TTTGCCC   [HTTIM] [15]
  araFp3 1986238 araH, araG, araF 110 aattctgcgatgtgatattgctctcctatggagaattaatttctcgctaaaactatgtcaAcacagtcacttatcttttag
                       -35                 -10              +1                    		CTCGCTAAAAC CTCCTA [ICWHO]
[TIM] 		[24]
[1]
[15]
  arrSp2 3658054 arrS 0 caagaataagttatcaataaccagtttgtgatctctgaagaatattactaaagttaaaatGtaatccgatttaaatatcga
                          -35               -10             +1                    		ATTACTAAAGT TTGTGA [HIPP]
[ICWHO] 		[25]
[1]
  artPp1 903815 artM, artQ, artI, artP 81 ccgcccccgttattttgtgctatgtttattgaataatgcgctttgcttttaacttttaaaGcagaaatattgcataattat
                             -35              -10           +1                    		CTTTTAACTTT TTGAAT [ICWHO]
[TIM] 		[1]
[20]
  artPp2 903836 artM, artQ, artI, artP 102 gacatttatgctcgccgaccaccgcccccgttattttgtgctatgtttattgaataatgcGctttgcttttaacttttaaa
                           -35             -10              +1                    		ATGTTTATTGA CCCGTT [ICWHO]
[TIM] 		[1]
[20]
  artPp3 903843 artM, artQ, artI, artP 109 gaatgccgacatttatgctcgccgaccaccgcccccgttattttgtgctatgtttattgaAtaatgcgctttgcttttaac
                          -35               -10             +1                    		TGTGCTATGTT CCACCG [ICWHO]
[TIM] 		[1]
[20]
  asrp2 1671327 asr 49 gttacacgctgaaaccaaccactcacggaagtctgccattcccagggatatagttatttcAacggccccgcagtggggtta
                                 -35              -10       +1                    		ATAGTTATTTC CTGCCA [ICWHO]
[IMP]
[TIM] 		[1]
[26]
[27]
  astCp3 1832039 astE, astB, astD, astA, astC 57 tccgccgtttatgcacttttatcactggctggcacgaaccctgcaatctacatttacagcGcaaacattacttattattaa
                         -35                -10             +1                    		CAATCTACATT CTGGCT [CV(RPF/TIM)]
[HIPP]
[ICWHO]
[RPF]
[TIM] 		[28]
[1]
[29]
  blcp 4377745 blc 23 catcgggtccgaattttcggaccttttctccgcttttccttgctgtcatctacacttagaAaaaaaccagtaaggaaacat
                             -35              -10           +1                    		TCATCTACACT TCCGCT [ICWHO]
[TIM] 		[30]
[1]
  blrp 1704512 blr 39 atcgcaaaaacctcagtaaaaatcttgctggagctattattgctaagtaacatttaccccCtgaagttaatggatcaatca
 		    [RS-EPT-CBR]
[TIM] 		[3]
[31]
[32]
  bolAp 454434 bolA 38 aacctaaatatttgttgttaagctgcaatggaaacggtaaaagcggctagtatttaaaggGatggatgacatctcagcgtt
                       -35                 -10              +1                    		GCGGCTAGTAT CTGCAA [AIPP]
[CV(RPF/RS-EPT-CBR)]
[CV(RPF/TIM)]
[ICWHO]
[RPF]
[RS-EPT-CBR]
[TIM] 		[33]
[34]
[1]
[35]
[36]
[3]
[37]
  bsmAp 4416869 bsmA 99 atgacatgaagaaatccttagcacaagtttctgctggcggtattagttcataatgttgagAtgtgggttacgctttcgtca
                                                 -10        +1                    		CATAAT   [NTAS] [38]
  cbpAp 1064037 cbpM, cbpA 262 ttccaggcctgtttcaaataattatttgcagtgcaactaattccatgtatattactacccAtatatagcgtctataaaatt
                         -35                    -10         +1                    		TATATT TTTGCA [TIM] [39]
  cbpAp2 1063828 cbpM, cbpA 53 tttcaataacatattctgtgttggcatatgaaattttgaggattaccctacacttataggAgttaccttacaggggttcct
                            -35             -10             +1                    		TACCCTACACT ATGAAA [CV(RPF/RS-EPT-CBR)]
[CV(RPF/TIM)]
[HIPP]
[ICWHO]
[RPF]
[RS-EPT-CBR]
[TIM] 		[1]
[3]
[40]
[41]
  cfap 1741201 cfa 212 tacttaggctgctaacaaaattttgttgtatgattgaaattagcggcctatactaatttcGagttgttaaagctacgataa
                         -35                -10             +1                    		CGGCCTATACT GTTGTA [HIPP]
[ICWHO]
[RS-EPT-CBR]
[TIM] 		[1]
[35]
[3]
[42]
  cfap2 1741379 cfa 34 agactcgcggttttttctgcgagatttctcacaaagcccaaaaagcgtctacgctgttttAaggttctgatcaccgaccag
                            -35              -10            +1                    		GCGTCTACGCT CTCACA [HIPP]
[ICWHO]
[TIM] 		[1]
[42]
  cpxRp2 4105686 cpxA, cpxR 16 gggggtgtaaaacaacgtaaagtcatggattagcgacgtctgatgacgtaatttctgcctCggaggtatttaaacaatgaa
 		    [HIPP] [43]
  crrpI 2535610 crr 224 aggcaaatggactggcatgtgtggtgagcttgctggcgatgaacgtgctacacttctgttGctggggatgggtctggacga
 		    [TIM] [44]
  csgBp2 1103859 csgB, csgA, csgC 92 aagaaaaatacaacgcgcgggtgagttattaaaaatatttccgcagacatactttccatcGtaacgcagcgttaacaaaat
                          -35                   -10         +1                    		CATACTT TTATTA [CV(RPF/TIM)]
[RPF]
[TIM] 		[45]
[46]
  csgDp 1103335 csgG, csgF, csgE, csgD 139 tagttacatgtttaacacttgatttaagatttgtaatggctagattgaaatcagatgtaaTccattagttttatattttac
                   -35                   -10                +1                    		TAGATTGAAATC TTGATT [TIM] [47]
  csgDp3 1103344 csgG, csgF, csgE, csgD 148 agttacatttagttacatgtttaacacttgatttaagatttgtaatggctagattgaaatCagatgtaatccattagtttt
                            -35              -10            +1                    		ATGGCTAGATT TTGATT [ICWHO]
[TIM] 		[48]
[1]
[47]
  csiDp 2788927 glaH, lhgD, gabD, gabT, gabP 58 ataagaaaacaatatgtcgcttttgtgcgcatttttcagaaatgtagatatttttagattAtggctacgaaatgagcatcg
                                 -35              -10       +1                    		ATTTTTAGATT TTTTCA [ICWHO]
[TIM] 		[1]
[49]
[50]
  csiEp2 2665401 csiE 34 cttgccaacatttctgatgattagcattcccttcgccatttccttgagcaaactttagctAttcttatcaattatgcttat
                           -35               -10            +1                    		TGAGCAAACTT TTCCCT [HIPP]
[ICWHO]
[TIM] 		[1]
[51]
  csrAp 2819373 csrA 227 tacctgcagcgttagccagtgtgaaaggctgggtcagcgcgaaattgcaataatataagcGtcaggcaatgccgtggactc
                         -35                -10             +1                    		ATTGCAATAAT AAGGCT [HIPP]
[ICWHO]
[TIM] 		[1]
[52]
  csrAp3 2819273 csrA 127 aacgctatcgacaacgataaagtcaggttgaagttgtgtatatcggctaaacttaggtttAacagaatgtaatgccatgac
                        -35                -10              +1                    		TCGGCTAAACT CAGGTT [HIPP]
[HTTIM]
[ICWHO]
[RS-EPT-CBR]
[TIM] 		[1]
[53]
[3]
[52]
  cyaRp3 2167114 cyaR 0 tggaaaattcttagaaaccgatcacatacagctgcatttattaaggttatcatccgtttcGctgaaaaacataacccataa
                         -35               -10              +1                    		AAGGTTATCAT CATACA [AIPP]
[HTTIM]
[ICWHO]
[RS-EPT-CBR]
[TIM] 		[54]
[1]
[55]
[15]
[3]
  ddpXp2 1563201 ddpF, ddpD, ddpC, ddpB, ddpA, ddpX 125 tacgattccgggagattccttccttaacttcccctcttgcaccaaaactgcactacgctgCacaaatgttgatcaaaagtt
                                                -10         +1                    		CTGCACT   [HIPP] [56]
  ddpXp3 1563249 ddpF, ddpD, ddpC, ddpB, ddpA, ddpX 173 gggttttcatttaacgtgacactgtcacttaaatactgtgatttcagctacgattccgggAgattccttccttaacttccc
                                                -10         +1                    		CTACGAT   [HIPP] [56]
  dhaKp 1250944 dhaM, dhaL, dhaK 106 aaagtttcaatatggaacattcattaaagcatatgtttcactatgaaacataatttgggcTaattttcttttcccttgcct
                    -35              -10                    +1                    		TTCACTATGAA TTCATT [AIPP]
[ICWHO] 		[1]
[53]
  dhaRp 1251003 dhaR 63 tagcccaaattatgtttcatagtgaaacatatgctttaatgaatgttccatattgaaactTttacgtgtattaatacttaa
                        -35                 -10             +1                    		TGTTCCATATT GAAACA [AIPP]
[ICWHO] 		[57]
[1]
  dinBp2 250880 dinB, yafN, yafO, yafP 18 cgcgttaaatgctgaatctttacgcatttctcaaaccctgaaatcactgtatactttaccAgtgttgagaggtgagcaatg
                            -35              -10            +1                    		CACTGTATACT TTCTCA [AIPP]
[ICWHO] 		[1]
  dkgAp 3156571 dkgA 52 cccgctaagctttttacgcctcaaactttcgttttcgggcatttcgtccagacttaagttCacaacacctcaccggagcct
 		    [HTTIM] [53]
  dkgBp 229098 dkgB 69 tttttttcgtctgtatatctattattgccagaatcgcaaaaatcctctgcattttacgctCtttttcctcaacagtctgaa
                                 -35              -10       +1                    		CATTTTACGCT ATCGCA [AIPP]
[ICWHO] 		[57]
[1]
  dnaNp 3882733 recF, dnaN 412 aacgacattcgtttgccgggcgaagtggcgttctttatcgccaagcgtctacgatctaacGtacgtgagctggaaggggcg
                         -35                 -10            +1                    		GCGTCTACGAT GTGGCG [HIPP]
[ICWHO]
[TIM] 		[58]
[1]
[59]
  dnaNp5 3882348 recF, dnaN 27 gccgtaagatcgagcagttgcgtgaagagagccacgatatcaaagaagatttttcaaattTaatcagaacattgtcatcgt
                               -35                -10       +1                    		TTTTTCAAATT GCCACG [HIPP]
[ICWHO]
[TIM] 		[58]
[1]
[59]
  dnaNp6 3882590 recF, dnaN 269 tgaggcgctgcgcgacttgctggcattgcaggaaaaactggtcaccatcgacaatattcaGaagacggtggcggagtacta
                          -35                -10            +1                    		CCATCGACAAT TTGCAG [HIPP]
[ICWHO]
[TIM] 		[58]
[1]
[59]
  dpsp2 848950 dps 39 attagtgtgataggaacagccagaatagcggaacacatagccggtgctatacttaatctcGttaattactgggacataaca
                          -35              -10              +1                    		GGTGCTATACT TAGCGG [ICWHO]
[RS-EPT-CBR]
[TIM] 		[60]
[1]
[20]
[3]
  ecnBp 4376509 ecnB 44 ttctcttccgaaaaatcatcagattcccatcatttttggcgatgttgtctattattaattTgctataggcaaacataaata
                         -35                 -10            +1                    		TTGTCTATTAT TCCCAT [ICWHO]
[TIM] 		[61]
[1]
  elaBp 2381053 elaB 26 ttgggatggcacgcgaggtaattcaggcgtaatcaacaacccttgtctatagttagtgacAggttttacgcaaatggagaa
                      -35                     -10           +1                    		TCTATAGTTA TTCAGG [ICA]
[IEP]
[RS-EPT-CBR]
[TIM] 		[62]
[63]
[3]
[64]
  enop5 2908152 eno 211 tctgcgcgttgcgggccgttccggggatgatcagttggtcgagatcatcgaagttccgaaTcacccgtggttcgtggcttg
                                               -10          +1                    		ATCGAAGT   [HTTIM] [2]
  enop8 2907968 eno 27 gtaaaaaagttagagcggcaacgcgtaccctgggtacgcgttgtttgtctggagtttcagTttaactagtgacttgaggaa
                                                 -10        +1                    		CTGGAGTT   [HTTIM]
[RS-EPT-CBR] 		[2]
[3]
  epdp2 3073823 fbaA, pgk, epd 132 aatgtcttcttcggctggacaaacattccttttattccacgtttcgcttatcctagctgaAgcgtttcagtcgattaaatg
                          -35               -10             +1                    		TCGCTTATCCT TTCCTT [HIPP]
[HTTIM]
[ICWHO]
[RS-EPT-CBR]
[TIM] 		[65]
[66]
[1]
[2]
[3]
  evgAp1 2483641 evgA, evgS 114 tccctgattttattgttgacatttcatttatgccgactatttatatggtatacttgtcgaAttatcttaaaggaagctcag
                           -35              -10             +1                    		TATGGTATACT TTTATG [ICWHO]
[RS-EPT-CBR]
[TIM] 		[1]
[3]
[67]
  fadLp 2461205 fadL 101 tttgaaaaaagatagaaacatacttgcaacattccagctggtccgacctatactctcgccActggtctgatttctaagatg
                        -35                 -10             +1                    		CGACCTATACT TTGCAA [HIPP]
[ICWHO]
[TIM] 		[68]
[69]
[1]
[35]
  fbaBp 2178667 fbaB 103 gcgctaacattttttctgatgaatcgagccaacagaaaacgctgaaaaaacatccaaaagAtggaaaaactcgcccgtaac
                                 -35              -10       +1                    		ACATCCAAAAG CAGAAA [AIPP]
[ICWHO]
[TIM] 		[1]
[20]
  frdAp2 4382412 frdD, frdC, frdB, frdA 94 taaaaaaatcgatctcgtcaaatttcagacttatccatcagactatactgttgtacctatAaaggagcagtggaatagcgt
                       -35                  -10             +1                    		TATACT TTTCAG [TIM] [70]
  ftsQp 102867 ftsQ, ftsA, ftsZ 288 tactcggtgaagaaattttaccgtcaatacgtattcaaccgtccggaaccttctatgattAtgaggcgaagtatctctctg
                                -35              -10        +1                    		CCTTCTATGAT TATTCA [HIPP]
[ICWHO]
[TIM] 		[71]
[72]
[1]
[73]
  ftsQp2 102742 ftsQ 413 cagtgtgggaatgtcaaaagtagtagcagaaaatgctctacaagatgcattaagattggcAtttcagcacgatgaagaagt
                           -35                -10           +1                    		TGCATTAAGAT CAGAAA [HIPP]
[ICWHO]
[TIM] 		[71]
[72]
[1]
[74]
  fumCp 1686709 fumC 121 cagatacaactcacacaatgcacccgctgtgtgaaataaacagagccgcccttcggggcgGtttttttacatggcacgaaa
                               -35             -10          +1                    		CGCCCTTCGGG GTGAAA [ICWHO]
[TIM] 		[75]
[1]
[76]
  gabDp 2791172 gabD, gabT, gabP 101 ggcagcgacatcagcaattcctattggtgcgcatattgtcagcaaggtacaaacgctgttGgcaagccagagtaaccccgg
                        -35                -10              +1                    		CAAGGTACAAA TTGGTG [HIPP]
[ICWHO]
[TIM] 		[1]
[77]
  gabDp2 2790912 gabD, gabT, gabP 361 gagattttgggctcgtcggggattcgccgggtgctgcaaaaccatctacgctcaggactgGgcgagatgaaaaactcgctg
                        -35               -10               +1                    		CCATCTACGCT TCGCCG [HIPP]
[ICWHO]
[TIM] 		[1]
[50]
  gadAp2 3667607 gadX, gadA 27 tatttaaattaagcctgtaatgccttgcttccattgcggataaatcctacttttttattgCcttcaaataaatttaaggag
                         -35                    -10         +1                    		TACTTTTTT TTGCTT [HIPP]
[TIM] 		[78]
[79]
[80]
  gadBp2 1572072 gadC, gadB 27 tatttaaacacgagtcctttgcacttgcttactttatcgataaatcctacttttttaatgCgatccaatcattttaaggag
                        -35                -10              +1                    		AATCCTACTTT CTTGCT [HIPP]
[ICWHO]
[TIM] 		[78]
[1]
[79]
[80]
  gadEp 3658345 gadE, gadF, mdtE, mdtF 21 atattgaacaacgattcggacaaggatgtaaataatgaaaaggatgacatattcgaaacgAtaacggctaaggagcaagtt
                                  -35             -10       +1                    		TATTCGAAACG AATGAA [ICWHO]
[TIM] 		[1]
[81]
  gadEp1 3658242 gadE, gadF 124 ttaggatcaatatatggagtgcgtgatggataaatctgaagtattgattagtgttaatagAcgtattagttcacgaagggt
                           -35              -10             +1                    		TTGATTAGTGT TGGATA [ICWHO]
[IEP]
[TIM] 		[82]
[1]
[83]
  gadXp 3665839 gadW, gadX 29 tttaaatttatttatcaatcaatttgacttaagagggcggcgtgctacattaataaacagTaatatgtttatgtaatatta
                        -35              -10                +1                    		CGTGCTACATT TTGACT [HIPP]
[ICWHO]
[TIM] 		[1]
[84]
  gadYp 3664864 gadY 0 atagcttatgtttataaaaaaatggctgatcttatttccagtaaaagttatatttaacttActgagagcacaaagtttccc
                          -35               -10             +1                    		AAAGTTATATT CTGATC [AIPP]
[ICWHO]
[IMP]
[TIM] 		[1]
[85]
  galEp 792081 galM, galK, galT, galE 26 gattccactaatttattccatgtcacacttttcgcatctttgttatgctatggttatttcAtaccataagcctaatggagc
                            -35             -10             +1                    		TATGCTATGGT CTTTTC [CV(RPF/TIM)]
[ICWHO]
[RPF]
[TIM] 		[86]
[1]
[87]
[88]
[89]
  gapAp 1862735 gapA 36 gtcgcaatgattgacacgattccgcttgacgctgcgtaaggtttttgtaattttacaggcAaccttttattcactaacaaa
                          -35               -10             +1                    		TTTGTAATTTT TTGACG [HIPP]
[HTTIM]
[ICWHO]
[IMP]
[RS-EPT-CBR]
[TIM] 		[66]
[90]
[1]
[2]
[3]
[91]
  glgCp3 3569571 glgP, glgA, glgC 243 tttggtggagaatcgctggtgggaagaaggcgacggcaatgtccgttggctaaatcgataTgctcaacctttaagcacgga
                           -35                -10           +1                    		TTGGCTAAATC AAGGCG [ICWHO]
[TIM] 		[1]
[92]
  glgSp1 3192012 glgS 73 ttcactaaaaagtgtgatcggggacaatatatttacgcacgttatgtttaaaggcactacActgattggggaatactgaaa
                  -35                 -10                   +1                    		CACGTTATGTT TCGGGG [HIPP]
[ICWHO]
[TIM] 		[93]
[1]
  glgSp2 3192002 glgS 63 agtgtgatcggggacaatatatttacgcacgttatgtttaaaggcactacactgattgggGaatactgaaatcagaaaaag
                        -35                -10              +1                    		GGCACTACACT TACGCA [ICWHO]
[TIM] 		[93]
[1]
  glkp2 2509461 glk 35 ttacagggagcctgcctttccggcgttgttgttatgcccccaggtatttacagtgtgagaAagaattattttgactttagc
                                                -10         +1                    		TTACAGTG   [HIPP]
[HTTIM] 		[94]
[2]
  glkp3 2509447 glk 21 cctttccggcgttgttgttatgcccccaggtatttacagtgtgagaaagaattattttgaCtttagcggagcagttgaaga
                                              -10           +1                    		AAAGAATT   [HTTIM]
[RS-EPT-CBR] 		[53]
[2]
[3]
  glsAp 511573 glsA, ybaT 68 ggattagacatttatctctttgttttcctgtagttaagttgcgggtgctaagttaaatcaGgatgcctgaaaatcggcacc
 		    [TIM] [95]
[31]
  gltBp2 3354509 gltB, gltD, gltF 216 acatttctgtaccaataagcttgccatttgacctgtatcagctttcccgataagttggaaAtccgctggaagctttctgga
 		    [HIPP]
[TIM] 		[96]
[31]
[97]
  gorp2 3646112 gor 187 aactggcggtactgccagacagcgatcgccgtggcatgaccgcttccggcatgattgtgaTtaacccgccgtggaaactgg
                         -35                      -10       +1                    		CATGAT ATCGCC [AIPP] [1]
  gpmAp3 787670 gpmA 75 tgcaactcaatattcacaacaaccttacactgcgccactattttcgctatggttatgcgtAagcattgctgttgcttcgtc
                                               -10          +1                    		CTATGGTT   [HTTIM]
[RS-EPT-CBR] 		[2]
[3]
  gpmAp4 787632 gpmA 37 tattttcgctatggttatgcgtaagcattgctgttgcttcgtcgcggcaatataatgagaAttattatcattaaaagatga
                           -35                    -10       +1                    		ATATAATG ATTGCTGTT [AIPP]
[HTTIM]
[RS-EPT-CBR] 		[2]
[3]
[98]
  gpmMp2 3785187 gpmM, envC, yibQ 73 gacgaaaaaaaagcgtaaatctggcatcggcttgccgcgagcggtcgtatattttgatctTcagaggctattttatcgatt
                                                -10         +1                    		TATATT   [HTTIM] [15]
  gyrBp2 3880150 gyrB 31 atagacatgtcggacgaaaattcgaagatgtttaccgtggaaaagggtaaaataacggatTaacccaagtataaatgagcg
                         -35               -10              +1                    		AAGGGTAAAAT AAGATG [HIPP]
[ICWHO]
[IMP]
[TIM] 		[99]
[1]
[100]
  hchAp2 2035630 hchA 205 tccacagcactaaatctctccccgccaccccgtacctctgataatggtctaaaatcattgAagccacttgcgacgacgttg
                            -35              -10            +1                    		TGGTCTAAAAT CCCCGT [ICWHO]
[TIM] 		[1]
[101]
  hdeAp2 3656791 yhiD, hdeB, hdeA 51 tctgattttgatattttccatcaacatgacatatacagaaaaccaggttataacctcagtGtcgaaattgattcgtgacgg
                           -35                   -10        +1                    		TATAACCT TGACA [HIPP]
[RS-EPT-CBR]
[TIM] 		[45]
[102]
[79]
[3]
  hdeDp2 3656960 hdeD 35 taggaaatttttattaaatcgactgcattcttagacgcgtttttggcatagattgatagcAggggattttcttcttaattt
 		    [HIPP]
[RS-EPT-CBR]
[TIM] 		[82]
[79]
[3]
[31]
  hdfRp 3948021 hdfR 54 cacgctcctaattctttgaccgagctagttatggcgcggagtattagttacgcttgacagAgtgtaaaacaaaacatttaa
                         -35                -10             +1                    		TTAGTTACGCT CTAGTT [ICWHO]
[IHBCE] 		[57]
[1]
  hmpp 2685797 hmp 38 tttctgaaaaacaccaaagaaccatttacattgcagggctattttttataagatgcatttGagatacatcaattaagatgc
                         -35              -10               +1                    		TTTTTTATAAG TTTACA [CV(RPF/TIM)]
[HIPP]
[ICWHO]
[RPF]
[TIM] 		[1]
[103]
[104]
  hofMp 3522928 hofP, hofO, hofN, hofM 177 ttaatgtcgccacatccggcagttgtggctcgatgtagcggtataggccataaatcgagcCtgctcccagcagaatgcaac
                         -35                -10             +1                    		TAGGCCATAAA GTGGCT [AIPP]
[ICWHO] 		[57]
[1]
  hyaAp2 1031984 hyaA, hyaB, hyaC, hyaD, hyaE, hyaF 155 aaaagataaatccacacagtttgtattgttttgtgcaaaagtttcactacgctttattaaCaatactttctggcgacgtgc
                          -35              -10              +1                    		TTCACTACGCT TTGTTT [HIPP]
[ICWHO]
[IMP]
[TIM] 		[22]
[1]
[105]
  idlPp 4556856 idlP, iraD 57 gacttttttcctgaaaagtcagtagatattcataggcaagtaaggttttatactttgctgAcaggattcaggcctgtctca
                         -35                -10             +1                    		GGTTTTATACT GATATT [HIPP]
[ICWHO]
[RS-EPT-CBR]
[TIM] 		[1]
[53]
[106]
[3]
  ihfAp4 1795721 ihfA 169 gatattttatccgaatgtaagaaagttggcgtaaatcaggtagttggcgtaaacttatttGacgtgtaccgcggtaagggt
                          -35                -10            +1                    		TGGCGTAAACT TTGGCG [HIPP]
[ICWHO]
[TIM] 		[107]
[1]
[108]
  ihfBp2 963749 ihfB 79 tttattccgaagtttgttgagtttacttgacagattgcaggtttcgtcctgtaatcaagcActaagggcggctacggccgc
                           -35               -10            +1                    		CGTCCTGTAAT TTGACA [HIPP]
[ICWHO]
[TIM] 		[107]
[1]
[109]
  ilvYp2 3957867 ilvY 47 gtttgcgagattgaattcactatatgacaggaaatttattgcggaaattgatatattcacAacgtcacattgcaatttttg
                     -35               -10                  +1                    		TTGCGGAAATT TATATG [HIPP]
[ICWHO]
[IEP]
[IMP]
[TIM] 		[1]
[110]
[111]
[112]
  insC-5p 3186040 insC5, insCD5, insD5, yqiH, yqiI, yqiG 147 gttcgcccggccacatcattaacggattaatgataagtggatcagatgtataaaaaattaAaattaaccacaataagcgaa
                                                 -10        +1                    		TATAAA   [HTTIM] [15]
  insN-1p 270226 insI1, insN 377 tttgctaagagcttcattcatgaatccttttcactagggatgaagtggtttactgaatttGgccacctgaacagaggtgat
                                              -10           +1                    		TGGTTTACT   [HTTIM] [15]
  katEp 1813814 katE 53 aacaccgtttccagaatagtctccgaagcgggatctggctggtggtctatagttagagagTtttttgaccaaaacagcggc
                       -35                 -10              +1                    		TGGTCTATAGT CCGAAG [ICWHO]
[IMP]
[TIM] 		[1]
[113]
[114]
  kbpp4 2796814 kbp 28 attaaacctgtgctcatccccgcggcgttaacgcgccgcgttcctctgctacactttctgAgtgtttccgttaacgaatga
                                                -10         +1                    		GCTACACT   [ICWHO] [1]
  ldcCp null ldcC       [IMP]
[TAS] 		[115]
[116]
[117]
  lsrAp 1601460 lsrA, lsrC, lsrD, lsrB, lsrF, lsrG, tam 30 atatgtgcaatgtccacctaaggttatgaacaaattaaaagcagaaatacatttgttcaaAactcacctgcaaaactgaac
                          -35                 -10           +1                    		AATACATTTGT ATGAAC [AIPP]
[ICWHO] 		[57]
[1]
[118]
[119]
  luxSp1 2815065 luxS 332 tgcttcgataatcccgatctgactttctctgcccgtatcttaaggtctatgattgatactGgtattggcggaacaggcaaa
                          -35              -10              +1                    		AGGTCTATGAT TCTCTG [HIPP]
[ICWHO]
[TIM] 		[1]
[120]
  mdtAp 2153979 mdtA, mdtB, mdtC, mdtD, baeS, baeR 37 ccagacagtgtttcataattcctccatttttctcccttattggctggctacactagtatcAttccgcgaaacgtttcagga
                         -35                -10             +1                    		CTGGCTACACT CATTTT [AIPP]
[ICWHO] 		[57]
[1]
  metKp2 3086577 metK 129 gattcaaaaaaaagtggaaatagggtgaagaattgacctaaaatagccatccagatgttaAtccatccataccgattaaca
 		    [HIPP]
[TIM] 		[31]
[121]
  mglBp2 2240566 mglC, mglA, mglB 218 cgctttcaatctgtgagtgatttcacagtatcttaacaatgtgatagctatgattgcaccGttttaacgttgtaacccgta
                        -35                 -10             +1                    		ATAGCTATGAT CACAGT [HIPP]
[ICWHO]
[IMP] 		[122]
[1]
[123]
  micFp2 2313084 micF 0 aagtatttgacagcactgaatgtcaaaacaaaaccttcactcgcaactagaataactcccGctatcatcattaactttatt
 		    [HIPP]
[TIM] 		[124]
[31]
  mlrAp2 2214840 mlrA 26 tagatgcacaaaaaacgggcaaaactacctggttcgcaaaactgcgtctaaagttaaaccGggacctcgcgagcaagggtg
                          -35               -10             +1                    		GCGTCTAAAGT TACCTG [HIPP]
[ICWHO]
[TIM] 		[1]
[125]
  mnmGp2 3925674 rsmG, mnmG 41 atacccaggatcccaggtctttctcaagccgacaaagttgagtagaatccacggcccgggCttcaatccattttcataccg
 		    [TIM] [126]
  mplp 4455728 mpl 57 ctcaatgttgcgctcaggtgaatcgcgccagcaaattacggattatcctgaaatgcgtttCtcacttgcccgacatatgcg
                       -35             -10                  +1                    		CGGATTATCCT TCGCGC [HIPP]
[ICWHO] 		[1]
[127]
  msyBp 1114213 msyB 32 atcgaactgatttttcgcctttcatacttgcaaaagcggagaatcagctatccttttcccTgaaacctcatcaactcaaag
                            -35             -10             +1                    		TCAGCTATCCT TTGCAA [ICWHO]
[TIM] 		[1]
[20]
  mtnp2 179183 yadS, btuF, mtn 30 gtgccatgtcctctcccgcgtgagaaatacgcttccccgtaagcgcatggtaaactatgcCttcaaatcgggcttatcgcg
                            -35               -10           +1                    		CATGGTAAACT TACGCT [HIPP]
[ICWHO]
[TIM] 		[1]
[128]
  murQp 2545733 murQ, murP 40 tgcgagtgtagactcaatgattcctttaagcctgtcaattcgggatatatgattccatacAtctgcaattatttgatcgta
                          -35                 -10           +1                    		TATATGATTCC TTAAGC [ICWHO]
[RS-EPT-CBR]
[TIM] 		[1]
[129]
[3]
  murRp2 2545793 murR 184 gcacatttccagcgtcgatacgcggtcaatttcagccgaggcggtgttcgagccttcagtAatcatcttttcaaattgcat
                             -35             -10            +1                    		TGTTCGAGCCT ATTTCA [ICWHO]
[TIM] 		[1]
[129]
  mutSp 2857019 mutS 74 accagcatcaagaactcgccgttcgcttcttcccctgaaatgattaactccggtatcatgTgcgccttatgtgattacaac
                              -35                -10        +1                    		TCCGGTATCAT TTCCCC [ICWHO]
[TIM] 		[1]
[130]
  narUp2 1544163 narU 103 tctggctacttaatccccattctgcccccgcggttacgctttcttatctattctttcaatCagcacttcacccaattcatc
                           -35              -10             +1                    		TTATCTATTCT CCCGCG [HIPP]
[ICWHO] 		[131]
[1]
  nhaAp2 17317 nhaA, nhaR 172 tacttttcctaattaatccctcaggaatcctcaccttaagctatgattatctaggcttagGgtcactcgtgagcgcttaca
                              -35              -10          +1                    		TTATCTAGGCT CTCACC [ICWHO]
[TIM] 		[132]
[1]
  ompFp2 987092 ompF 110 ctttatctttgtagcactttcacggtagcgaaacgttagtttgaatggaaagatgcctgcAgacacataaagacaccaaac
 		    [RS-EPT-CBR]
[TIM] 		[133]
[3]
  osmBp 1343369 osmB 41 gcgcgagcagatttcacggaataatttcaccagacttattcttagctattatagttatagAgagcttacttccgtgaatca
                         -35              -10               +1                    		TTAGCTATTAT TTTCAC [HIPP]
[ICWHO]
[TIM] 		[134]
[135]
[1]
[136]
[137]
  osmBp1 1343476 osmB 148 ctggttgataattaagactatttacctgttattaacactctcaagatataaaattattatCagcgatataacaggaagtca
                                -35               -10       +1                    		AAAATTATTAT TTAACA [ICWHO]
[TIM] 		[134]
[1]
[136]
  osmCp2 1556606 osmC 19 attcggaatatcctgcttatcctcgtgctgtttctcacgtagtctataatttcctttttaAgcccacaggagagcaacaat
                       -35              -10                 +1                    		TAGTCTATAAT TCGTGC [HIPP]
[ICWHO]
[TIM] 		[138]
[139]
[140]
[141]
[1]
  osmEp2 1822283 osmE 27 aagcggagccgtttcgttcacgggcttgaaaaagcgcccaatgtattccaggcttatctaAcacgctgataaacaagagga
                          -35               -10             +1                    		TATTCCAGGCT TTGAAA [HIPP]
[ICWHO]
[RS-EPT-CBR]
[TIM] 		[142]
[138]
[143]
[144]
[1]
[3]
  osmFp 2219523 yehW, yehX, yehY, osmF 42 attctgcaactgaatccttccgctcaagctaaccccgccattatcaactatgcttttctcTtaattcgctgaaaacaacag
                         -35                -10             +1                    		TCAACTATGCT CAAGCT [ICWHO]
[RS-EPT-CBR]
[TIM] 		[145]
[1]
[3]
  osmYp2 4611153 osmY 243 ttgcttatgttttcgctgatatcccgagcggtttcaaaattgtgatctatatttaacaaaGtgatgacatttctgacggcg
                       -35                 -10              +1                    		TGATCTATATT CCCGAG [HIPP]
[ICWHO]
[TIM] 		[138]
[135]
[1]
[146]
[147]
[148]
  otsAp 1981651 otsA 39 catcatggcgactggcgggtgtgccggatgtctggagctggcttgaaatgataaccaccgCattacaacaaaaaagagaaa
                            -35              -10            +1                    		GAAATGATAAC ATGTCT [HIPP]
[ICWHO]
[TIM] 		[149]
[1]
[150]
  otsBp 1982465 otsA, otsB 78 tttcccaccatagccaaccgccataacggttggctgttcttcgttgcaaatggcgaccccCgtcacactgtctatacttac
                              -35                 -10       +1                    		ATGGCGACCCC TTGGCT [HIPP]
[ICWHO]
[TIM] 		[149]
[1]
[150]
  otsBp2 1982442 otsA, otsB 55 taacggttggctgttcttcgttgcaaatggcgacccccgtcacactgtctatacttacatGtctgtaaagcgcgttctgcg
                           -35               -10            +1                    		CTGTCTATACT ATGGCG [ICWHO]
[RS-EPT-CBR]
[TIM] 		[151]
[1]
[150]
[152]
[3]
  oxyRp2 4158457 oxyR 33 tgagcaattatcagtcagaatgcttgatagggataatcgttcattgctattctacctatcGccatgaactatcgtggcgat
                        -35                -10              +1                    		ATTGCTATTCT TTGATA [HIPP]
[ICWHO]
[TIM] 		[153]
[154]
[1]
  patAp 3219458 patA 36 gtgtttatcccgattttcgcgatcgcagccggagtggcgcaatccctgcaatacttaaatCggtatcatgtgatacgcgag
 		    [AIPP]
[TIM] 		[155]
  pcnBp 159171 folK, pcnB 45 cgagtcggcaattgtaaattcaacattctcaaatgcgtcatgctgagctatgattagccgCtatttttttgtcctgaatga
                           -35              -10             +1                    		TGAGCTATGAT TCTCAA [HIPP]
[ICWHO]
[TIM] 		[156]
[1]
[157]
[158]
  pcnBp4 159391 folK, pcnB 265 aagtgccagattacattcatctgccgctggcgcttaatccacaaggcgctaaactttccaAgcagaatcatgcgcctgcgt
                           -35               -10            +1                    		GGCGCTAAACT CTGGCG [ICWHO]
[TIM] 		[1]
[158]
  pdeRp 1346843 pdeR 101 tttttaactgactttcgtttgaaaactggcgtttttccaaaactggattacaaataaataTataaaaaaaacaatgcgttt
                          -35               -10             +1                    		TGGATTACAAA CTGGCG [HIPP]
[ICWHO]
[TIM] 		[159]
[1]
  pdhRp2 122034 pdhR, aceE, aceF, lpd 58 ttcatgatttcaatcaaaacctgtatggacataaggtgaatactttgttactttagcgtcAcagacatgaaattggtaaga
                        -35                 -10             +1                    		TTTGTTACTTT TATGGA [HIPP]
[HTTIM]
[ICWHO]
[RS-EPT-CBR]
[TIM] 		[160]
[1]
[2]
[161]
[3]
  pfkAp 4107474 pfkA 78 accgccatttggcctgacctgaatcaattcagcaggaagtgattgttatactatttgcacAttcgttggatcacttcgatg
                                              -10           +1                    		TTATACTA   [HIPP]
[HTTIM]
[RS-EPT-CBR] 		[162]
[163]
[53]
[2]
[3]
  pfkAp3 4107522 pfkA 30 tactatttgcacattcgttggatcacttcgatgtgcaagaagacttccggcaacagatttCattttgcattccaaagttca
                                        -10                 +1                    		AAGACTTCCGGC   [HTTIM] [2]
  pfkBp1 1806351 pfkB 19 ctccaataaatcatattgttaatttcttcactttccgctgattcggtgccagactgaaatCagcctataggaggaaatgat
                           -35               -10            +1                    		GGTGCCAGACT TTCACT [HIPP]
[ICWHO]
[TIM] 		[164]
[165]
[1]
[20]
  pfkBp2 1806323 pfkB 47 atatttatctgcaaaattttaaataaagctccaataaatcatattgttaatttcttcactTtccgctgattcggtgccaga
                              -35                 -10       +1                    		ATTTCTTCACT TCCAAT [ICWHO]
[TIM] 		[1]
[20]
  pgip2 4233722 pgi 36 acattacgctaacggcactaaaaccatcacatttttctgtgactggcgctacaatcttccAaagtcacaattctcaaaatc
                            -35              -10            +1                    		GGCGCTACAAT CACATT [HIPP]
[HTTIM]
[ICWHO]
[TIM] 		[166]
[1]
[2]
  poxBp2 911076 poxB 27 ttagtgcctcctttctctcccatcccttccccctccgtcagatgaactaaacttgttaccGttatcacattcaggagatgg
                       -35                 -10              +1                    		TGAACTAAACT TCCCTT [HTTIM]
[ICWHO]
[RS-EPT-CBR]
[TIM] 		[167]
[1]
[2]
[3]
[147]
  ppkp 2622977 ppk, ppx 67 attcacctgtaaatcgcaagctccagcagtttttttcccccttttctggcatagttggacAtctgccaatattgctcgcca
                                                  -10       +1                    		CATAGT   [HTTIM] [15]
  pqiAp 1011659 pqiA, pqiB, pqiC 342 gaagccgccgcggcaaaagcagaaactgtaaaacgcagcagtagcaaactaagctataaaTtgcagcgcgaactggagcag
                          -35                -10            +1                    		CAAACTAAGCT CTGTAA [HIPP]
[ICWHO]
[TIM] 		[1]
[168]
  pqiAp3 1011666 pqiA, pqiB, pqiC 335 ccgcggcaaaagcagaaactgtaaaacgcagcagtagcaaactaagctataaattgcagcGcgaactggagcagctaccgc
                   -35                -10                   +1                    		CAAACTAAGCT CTGTAA [HIPP]
[ICWHO]
[TIM] 		[1]
[169]
[168]
  proPp2 4330407 proP 95 actggtttgattgtacattccttaaccggagggtgtaagcaaacccgctacgcttgttacAgagattgcatcctgcaattc
                          -35               -10             +1                    		CCCGCTACGCT CCGGAG [HIPP]
[ICWHO]
[TIM] 		[170]
[1]
[171]
[172]
  proVp 2804563 proV, proW, proX 252 taattcccgccaaatagctttttatcacgcaaataatttgtggtgatctacactgatactCtgttgcattattcgcctgaa
                          -35               -10             +1                    		TGATCTACACT CACGCA [ICWHO]
[TIM] 		[173]
[1]
[174]
  pstBp2 3908556 phoU, pstB 190 ttaccctgtgcgtactgctgctgaacattctggcgcgcgttgtttttgcgaagaataaacAcggttgatattgctgacacg
                              -35             -10           +1                    		TTGCGAAGAAT CTGGCG [HIPP]
[ICWHO]
[IMP]
[TIM] 		[1]
[175]
  pstCp2 3910542 phoU, pstB, pstA, pstC 144 cggggctaaacaggcgaacgacctggattacgccagcctgccggatagtgtagttgaacaGgttcgcgctgcgtggaagac
                       -35             -10                  +1                    		TGCCGGATAGT CTGGAT [HIPP]
[ICWHO]
[IMP]
[TIM] 		[1]
[175]
  pstSp2 3911568 phoU, pstB, pstA, pstC, pstS 43 tcataaaactgtcatattccttacatataactgtcacctgtttgtcctattttgcttctcGtagccaacaaacaatgcttt
                        -35                -10              +1                    		TGTCCTATTTT CATATA [HIPP]
[ICWHO]
[TIM] 		[176]
[1]
[177]
[178]
[179]
[180]
  puuAp 1360968 puuP, ymjE, puuA 60 tcatttttgcaaactcaatttaacatttgacaaacatttagtttgcatacagattcgaatGgtggtcattatattttacgc
                           -35                  -10         +1                    		TACAGA TTGACA [AIPP]
[IMP]
[TIM] 		[57]
[181]
  puuCp 1362728 puuC, puuB, puuE 15 catacggcccggggatctctgcgccctgacgttcacaaactgcatatatctgatagacgtGaaacaggagtcataatgaat
                                                 -10        +1                    		TCTGAT   [HTTIM] [15]
  puuDp 1361052 puuD, puuR, puuC, puuB, puuE 68 atgtttgtcaaatgttaaattgagtttgcaaaaatgaaaacccactgctagattgaaaaaAtattgaacataaaggtcatt
                          -35                    -10        +1                    		TAGATT TTGCAA [HTTIM]
[IMP]
[TIM] 		[53]
[181]
  pykAp 1937544 pykA 105 ttgataagcagttacttaatttaagtgacgatcgctaaaaacgactgtcactgtcctaatCttatacgacatccgaatgag
                                                -10         +1                    		TCACTGTC   [HTTIM]
[RS-EPT-CBR] 		[53]
[2]
[3]
  pykAp3 1937494 pykA 155 attcagagataacttgaagcgggtcaaagaagcgctgaaggaatcgcgttttgataagcaGttacttaatttaagtgacga
                                                 -10        +1                    		TTTTGATA   [HTTIM]
[RS-EPT-CBR] 		[53]
[2]
[3]
  pykFp4 1755600 pykF 98 ggctgagacacaagcacacattcctctgcacgctttttcgatgtcacctatccttagagcGaggcaccaccactttcgtaa
                                                -10         +1                    		CTATCCTT   [HTTIM]
[RS-EPT-CBR] 		[53]
[2]
[3]
  pykFp5 1755663 pykF 35 gcaccaccactttcgtaataccggattcgctttccggcagtgcgcccagaaagcaagtttCtcccatccttctcaacttaa
                                              -10           +1                    		CCAGAAAG   [HTTIM] [53]
[2]
  ravAp 3931128 viaA, ravA 35 aaataccccccctttgagactattttagccaccagcaagaaacgtctatactcgcaatttAcgcagaacttttgacgaaag
                                              -10           +1                    		CTATACT   [HTTIM] [53]
[182]
  rhaSp2 4097711 rhaS, rhaR 25 tacgtggttttccgtcgaaaatttaaggtaagaacctgacctcgtgattactatttcgccGtgttgacgacatcaggaggc
                         -35                -10             +1                    		GTGATTACTAT AAGGTA [ICWHO]
[TIM] 		[183]
[1]
[184]
[185]
[186]
  rpoEp4 2710230 rseC, rseB, rseA, rpoE, rseD 66 ttactggctggtggaggattaggtggtgaaataaaaaggccgttgggttactcttcaggcAgttaaatgggcatttctaca
                          -35                    -10        +1                    		TACTCT GTGAAA [IHBCE]
[RS-EPT-CBR]
[TIM] 		[187]
[3]
  rpoHp 3601003 rpoH 220 acggtacaacatttacgccactttacgcctgaataataaaagcgtgttatactctttcccTgcaatgggttccgtagcagg
                         -35               -10              +1                    		CGTGTTATACT ACGCCT [HIPP]
[ICWHO]
[TIM] 		[188]
[189]
[1]
[190]
[191]
[192]
  rraAp 4119358 rraA 28 caaatatcaattaacaattgatgattttgccaacagcccacatagcgcgatatactgaaaAttctcgcagcaactgaatgt
                           -35              -10             +1                    		AGCGCGATATA TTGCCA [HTTIM]
[ICWHO]
[RS-EPT-CBR]
[TIM] 		[1]
[53]
[3]
[193]
  rsdp1 4196954 rsd 146 gatcgaaatttgccgcttcgccatatggcaattctcccttcggcaaccataatttttgttCatggctgacgacccaccagc
                         -35               -10              +1                    		GCAACCATAAT ATGGCA [HIPP]
[ICWHO]
[TIM] 		[1]
[194]
  rssAp 1289106 rssA, rssB 139 atcaggtgcaaccttttcaccagacacataagggtggcaacataggctatactcgacagcActaccacagggacaaagctg
                         -35               -10              +1                    		TAGGCTATACT CACATA [ICWHO]
[IMP]
[RS-EPT-CBR]
[TIM] 		[1]
[195]
[196]
[3]
  rssBp 1290220 rssB 22 ttatctacacttaagttaattctgacaggcgcaggtggcaatagcatgccactattgagtAaagccagtcaggggagagaa
                          -35                -10            +1                    		CATGCCACTAT CAGGCG [HIPP]
[ICWHO]
[TIM] 		[1]
[196]
  ryjAp 4278066 ryjA 0 tgcggttaaaaagtatacttttacactggcgaagaaacgtcggtgacatacaattaaagcAtcaacaccaaccggaacctc
                          -35                    -10        +1                    		TACAAT CTGGCG [TIM] [197]
  sdsNp1 1996921 sdsN 0 tatcatttataatgataattcaaactatcacataaataagatttatatataatttatattAttcaggcaatgaattacttt
                         -35               -10              +1                    		TTATATATAATTTA CTATCA [HIPP]
[IEP]
[IHBCE]
[TIM] 		[198]
  sdsNp2 1996880 sdsN 41 ccttatcctgcatagtaaaccgcaacgcccctgagagtgagtatcatttataatgataatTcaaactatcacataaataag
                          -35               -10             +1                    		TCATTTATAATGA CGCCCC [HIPP]
[IEP]
[IHBCE]
[TIM] 		[198]
  sdsRp 1923207 pphA, sdsR 0 tttttattgaccattttgcacgcaaactggaaaacctggcgtcgtcatctattcttaaagGgcaaggcaactaagcctgca
                           -35                    -10       +1                    		TATTCT CTGGAA [HIPP]
[IHBCE]
[IMP]
[TIM] 		[199]
[198]
[200]
  sgrSp2 77367 sgrS, sgrT, setA 0 gaactcctgtgcaaaagacagcaattttattttccctatattaagtcaataattcctaacGatgaagcaagggggtgcccc
                          -35              -10              +1                    		AAGTCAATAAT TTTATT [AIPP]
[ICWHO]
[TIM] 		[1]
[201]
  sodCp 1724679 sodC 24 gtaagcacttttaggaatagccgccgttcaaaaatgtgtcactggtttacacttattcagGaatgcacaatgaacggaggt
                       -35                 -10              +1                    		TGGTTTACACT GCCGTT [HTTIM]
[ICWHO]
[TIM] 		[1]
[202]
[53]
  sohBp 1329284 sohB 48 aaatggatactttgtcatactttcgctgcaataacatctctgcgagacggcttaacatgcCtgttgtaaactgtgagccaa
                      -35              -10                  +1                    		TCTGCGAGACG TTCGCT [HIPP]
[ICWHO] 		[1]
[127]
  speBp 3083946 speB 149 gaactgcaacaacagttccttgaagagttcgaggcaggtttgtacggttatacttatcttGaagatgagtaagtcctgtgt
                            -35             -10             +1                    		ACGGTTATACT TTCGAG [HIPP]
[ICWHO]
[TIM] 		[1]
[203]
  speCp 3109175 speC 20 accagtttgacccatatctcatggggcagggttttccaccttgtccggtattcttacttcCccgaaacgggtttgcgctta
                           -35              -10             +1                    		TCCGGTATTCT CAGGGT [AIPP]
[HIPP]
[ICWHO] 		[204]
[1]
  srap 1556046 sra 83 acgatcaattatgtggtcagtggccagcaccctacgctttaaggtgctatgcttgatcggCaacctaatttaggggtttag
                        -35                -10              +1                    		GGTGCTATGCT CCAGCA [ICWHO]
[TIM] 		[1]
[205]
[20]
  ssrSp 3055759 ssrS, fau 224 gcagcggacgatctgaaccaacggttgcaagatctgaaagaacgcactagagtcacaaatActgaacagttggtcttcatt
                         -35               -10              +1                    		CGCACTAGAGT TTGCAA [AIPP]
[ICWHO]
[RS-EPT-CBR]
[TIM] 		[206]
[1]
[207]
[3]
  sucAp 758586 sucA, sucB, sucC, sucD 120 cgtaacaaagaaatgcaggaaatctttaaaaactgcccctgacactaagacagtttttaaAggttccttcgcgagccacta
                         -35             -10                +1                    		GACACTAAGAC TTTAAA [ICWHO]
[TIM] 		[160]
[1]
[4]
  talAp1 2578588 talA, tktB 78 ctataacactgatgttacctgcttaatccagcaataccatgcctgtctgctatgctttttTgatgcgtttagcgaaatttc
                             -35              -10           +1                    		TCTGCTATGCT CAGCAA [ICWHO]
[TIM] 		[1]
[20]
  talAp2 2578570 talA, tktB 96 aatgttttggtaataatcctataacactgatgttacctgcttaatccagcaataccatgcCtgtctgctatgcttttttga
                              -35             -10           +1                    		CCAGCAATACC ATGTTA [ICWHO]
[TIM] 		[1]
[20]
  tamp 1607221 tam 125 gcctataaagatgaagacgcagtggcgttccataaaaccacgccccactacaaaacctgtGtcgcgaaactggaatcttta
                                                -10         +1                    		CTACAAA   [HTTIM]
[IEP] 		[15]
[64]
  tktBp 2579308 tktB 328 gtggtggaagaagatccgggcgttaaatcggtgcgcaatatctacgactactataagcaaCaccactatgaaaccattgtg
                           -35              -10             +1                    		ACGACTACTAT ATCGGT [HIPP]
[ICWHO] 		[1]
[208]
  tolCp4 3178074 tolC, ygiB, ygiC 41 ggcacgtaacgccaaccttttgcggtagcggcttctgctagaatccgcaataattttacaGtttgatcgcgctaaatactg
                          -35               -10             +1                    		TCCGCAATAAT TAGCGG [AIPP]
[ICWHO]
[RS-EPT-CBR]
[TIM] 		[1]
[3]
[209]
  topAp 1330789 topA 259 cacgctggtggcaagagcgccttactggcaactttggattttgcatgctaataaagttgcGtatcggattttatcaggtac
                         -35                -10             +1                    		CATGCTAATAA CTGGCA [HIPP]
[ICWHO]
[TIM] 		[1]
[210]
  tpiAp 4111569 tpiA 62 ggtttgaataaatgacaaaaagcaaagcctttgtgccgatgaatctctatactgtttcacAgacctgctgccctgcggggc
                                               -10          +1                    		CTATACTG   [HTTIM]
[RS-EPT-CBR] 		[53]
[2]
[3]
  treAp 1247425 treA 49 tgacagttcgcagaatgagatttcgatcatgcagctagtgcgatcctgaactaaggttttCtgatacttgaataccgtttt
                             -35               -10          +1                    		TGAACTAAGGT ATGCAG [HIPP]
[ICWHO]
[IMP]
[TIM] 		[1]
[211]
  treFp 3669551 treF 41 aacgtgatccaccgcacgctttgtcgcccaccaggcggagcgaatgactacccttaaagaAaagccgataattagcgacga
                                             -10            +1                    		TGACTACCCT   [HTTIM] [15]
  uspBp 3639848 uspB 128 gaatatattgatagtggttaaccttctggaaaaaaaacaacctgatctcctacactatctAtagagccgctcgtatgttgg
                          -35                 -10           +1                    		TCTCCTACACT CTGGAA [HIPP]
[ICWHO]
[TIM] 		[212]
[1]
[35]
  wrbAp 1067758 yccJ, wrbA 50 ataaatcaaataagtggttgtgaaatttgcactctgaaaaggacgtcttatctttaaataAgtggtagcgaatcgctacgg
                           -35                   -10        +1                    		TATCTTT TTGCAC [HTTIM]
[RS-EPT-CBR] 		[53]
[3]
  xapAp2 2524910 xapB, xapA 32 tattgaatgcgtgagaaaagtgtattggtaagagccgggacaacctcgctataaaaaggcGttagattccaccctacagaa
                         -35                 -10            +1                    		CTCGCTATAAA TTGGTA [HIPP]
[ICWHO]
[TIM] 		[1]
[213]
  xthAp 1832399 xthA 29 atcgatcaaatcacttaacaacaggcggtaagcaacgcgaaattctgctaccatccacgcActctttatctgaataaatgg
                         -35                -10             +1                    		TCTGCTACCAT GCGGTA [HIPP]
[ICWHO]
[RS-EPT-CBR]
[TIM] 		[1]
[3]
[214]
  yabIp 71271 yabI 80 gtttcgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataattggtAacgaatcagacaattgacgg
                                                -10         +1                    		TGTCATAAT   [HTTIM]
[RS-EPT-CBR]
[TIM] 		[53]
[3]
[215]
  yadVp2 156224 htrE, yadV 23 aattgattgaatgaatatacagggaataataatttctattttatattattccctgttttaAttaactctatcagggatggt
                      -35                 -10               +1                    		TATATTATTCC GGGAAT [HIPP]
[ICWHO]
[TIM] 		[1]
[216]
  ybgAp1 738980 ybgA, phr 21 gtcctgctacaacaggattaacttcacaaatatcatttctcaacgtctacacttactcctGtaaaccgctcaggagcagta
                       -35                 -10              +1                    		ACGTCTACACT TTCACA [ICWHO]
[RS-EPT-CBR]
[TIM] 		[1]
[20]
[217]
[3]
  ybgAp2 738920 ybgA, phr 81 cagctatggttagaaactacctgacgtcagtccttgcggggagcaggctttcgtaaatttGtcctgctacaacaggattaa
                                  -35             -10       +1                    		TTCGTAAATTT TTGCGG [ICWHO]
[TIM] 		[1]
[20]
  ybiIp6 838484 ybiI 28 tggtcggagatctgatgcttgaactgcccgagttcgtccctggattagctacacttaactGtacaagtattgatatgggga
                                                -10         +1                    		GCTACACT   [ICWHO] [1]
[38]
  ybjPp 904523 ybjP 56 ccttgtttgctaagccttcgatctcaaaagcattatcagactgatacgctattattgaaaGgatatcattattatcgtaga
                         -35                 -10            +1                    		TACGCTATTAT CAAAAG [ICWHO]
[TIM] 		[1]
[20]
  ycgZp2 1215752 ycgZ, ymgA, ariR, ymgC 37 gcaaaaaattaatttatcattctgtacacatatttcgtacaagtttgctattgttacttcActtaacattgattaacattt
                         -35                -10             +1                    		TTTGCTATTGT TACACA [HIPP]
[ICWHO]
[TIM] 		[57]
[1]
[218]
  yciGp 1316092 yciE, yciF, yciG 57 ccctctatcttctcgttgcgcttaatttgactaattctcattagcgactaattttaatgaGtgtcgacacacaacactcat
                           -35              -10             +1                    		GCGACTAATTT TTGACT [AIPP]
[HIPP]
[ICWHO] 		[1]
[219]
  yciTp 1344510 yciT 164 gatattgtgttagatatccttgtggcaggcgattaccactctgcgatccataatctcgagAtacttaaagcagaactcttg
                                                -10         +1                    		CCATAAT   [HTTIM] [15]
  yciZp 1344638 yciT, yciZ 29 gataattagccgttgctgttaaacacttctcttttagcggcaatttttgcattattcattTtcccccttttgctataagga
                               -35              -10         +1                    		TGCATTATTCA CTTTTA [ICWHO]
[TIM] 		[220]
[1]
  ydbDp 1475066 ydbD 78 ggagaatatggctgctgaaaaattgcatctttctgaggaagtgttgtctacgttggatggTatttcgcgagaataacgaat
                          -35               -10             +1                    		TTGTCTACGTT CATCTT [AIPP]
[ICWHO]
[IEP] 		[57]
[1]
[64]
  ydbKp4 1440846 ompN, ydbK 62 cgctgatgtgggggacacaaaagcgaaaatgcagaagaaagccatttgctaaaattgaaaGattactactgggcgcgcagc
                                                  -10       +1                    		TAAAAT   [ICWHO]
[IHBCE] 		[1]
[38]
  ydcSp1 1511599 ydcS, ydcT, ydcU, ydcV, patD 55 gaataaattttctcaggggcgaaggtgtgcctgcaagccgccgtctatggttaaacaaggAgatatttttacggcacggcg
                                            -10             +1                    		TCTATGGTTAA   [HIPP] [221]
  yddGp 1547205 yddG 36 gcggtagaaaaacgcaccactgcctgacaggccagttaaaaaaatgctataaaattcagcTtaatttttaacggcaagaga
                        -35                -10              +1                    		AATGCTATAAA CTGACA [ICWHO]
[TIM] 		[1]
[222]
  ydhYp 1754642 ydhT, ydhU, ydhX, ydhW, ydhV, ydhY 165 tgtaattttaattgataacgatcaatgttaagggctcagaataatcacattattttttctCctaaccataaaggattagtt
                            -35               -10           +1                    		CACATTATTTT TTAAGG [ICWHO]
[TIM] 		[1]
[223]
  yeiLp 2255290 yeiL 65 aaagaaaattcgaccgggccgatgattgaatcttaacaacagcgtacgtatgctaaatatGagaaatctcatagcggataa
                                 -35             -10        +1                    		TATGCTAAATA TTAACA [HIPP]
[ICWHO]
[TIM] 		[224]
[1]
  yffOp 2562053 yffO, yffP 58 acgccaaaattagcgctgaattaatgggtaattattgcggtttttgtcaattttcaacctCaattcttgcgaaaaatggca
                                             -10            +1                    		TGTCAATTT   [HTTIM] [15]
  yggEp1 3068126 yggE 46 ccttgttcagttaggcgctatctgatggaaaaataaaacagaggcgctaagcttgcctccAgaggtcctgaattttgggca
                         -35               -10              +1                    		GGCGCTAAGCT ATGGAA [ICWHO]
[RS-EPT-CBR]
[TIM] 		[1]
[20]
[3]
  yggEp2 3068185 yggE 105 atgtgttatgtggtttattgccttgcagctggcgagagacggtattgctcatgcacaagcCttgttcagttaggcgctatc
                          -35                -10            +1                    		TTGCTCATGCA CAGCTG [ICWHO]
[TIM] 		[1]
[20]
  yhfGp 3491648 pabA, fic, yhfG 28 caatcttgcccgcgcttctgctctcccggcgtaacccggatttgccgcttatacttgtggCaaatggacacgttcagggag
                                                  -10       +1                    		TATACT   [CV(RPF/RS-EPT-CBR)]
[CV(RPF/TIM)]
[HIPP]
[IEP]
[IHBCE]
[IMP]
[RPF]
[RS-EPT-CBR]
[TIM] 		[138]
[225]
[3]
[226]
[227]
  yhiMp 3634743 yhiM 98 tggccttttgaacgctgaaaagtagcgctctgcaaagtaaaccccgctatagttatgctaTgcatttgtctttaatgatat
                       -35                 -10              +1                    		CCCGCTATAGT TAGCGC [AIPP]
[ICWHO] 		[57]
[1]
[31]
  yhjGp 3678412 yhjG 62 tttcacgcccggcaccgatagaaacgctgaatacggcggttctggcgctataagctgcctCattttccgcctggctggact
                                                -10         +1                    		CTATAAG   [HTTIM]
[IEP] 		[15]
[64]
  yiaGp 3719431 yiaG 47 agccagagcatgccctgacttcaccccgctgtgtctgcttttcccgactattcttaatgaGcttcgatgcaattcacgatc
                          -35               -10             +1                    		CCGACTATTCT CCGCTG [ICWHO]
[TIM] 		[1]
[20]
  yihGp 4046652 yihG 50 attttttctaatgtggatagatatgaattatttttctccttaaggatcatccgttatttgGgtcgttttctgctaaaatct
                       -35                 -10              +1                    		AGGATCATCCG ATGAAT [HIPP]
[ICWHO]
[TIM] 		[1]
[228]
  yjcCp 4275418 pdeC 53 atttcaaatcaggcaaaagtgctatttataccgtaagatttatctaaagacgtcggtaccCagggttttcaccttgcaatg
 		    [HTTIM] [229]
  yjiYp 4591367 btsT 88 aaataaccactcagttatttaccttactttacgcgcgcgtaactctggcaacatcactacAggatagcggtcaatttacct
                           -35                -10           +1                    		TGGCAACAT CTTTACG [TIM] [230]
  ymiCp 1335424 ymiC, acnA 148 aatgttccgtcgttattccagacgactggcaactaacatcgcagcagcaagcctttatagAactgtttgctgaagatgatc
                          -35               -10             +1                    		GCAGCAAGCCT CTGGCA [HIPP]
[ICWHO]
[TIM] 		[75]
[1]
  ynfBp 1655709 ynfB, speG 99 aaaatagtaacgttgttttaatcatctttgtctcttattgacatcatgtatagttataggGcgacataatatcatcaatat
 		    [HTTIM] [53]
[31]
  ynfEp2 1658003 ynfE, ynfF, ynfG, ynfH, dmsD 66 tcatacccttctattgatatggattaataattcttaacccaaaatgggtagactccctctAttgttagcgcgctaaatatt
                        -35                 -10             +1                    		ATGGGTAGACT TTAATA [AIPP]
[ICWHO]
[RPF] 		[1]
[231]
[232]
  ytfKp 4439511 ytfK 76 ctttaggtaaaaaaagttatacgcggtggaaacattgcccggatagtctatagtcactaaGcattaaaatttgcgcctcat
                          -35               -10             +1                    		TAGTCTATAGT GTGGAA [ICWHO]
[RS-EPT-CBR]
[TIM] 		[1]
[20]
[3]
  znuAp 1942661 znuA 78 gaggacgcggcgttggccaaaagaaaccgagacattttccagggaaaccagacttgtcatGttaattttagtcttgcagta
                           -35              -10             +1                    		GAAACCAGACT CCGAGA [AIPP]
[ICWHO] 		[1]
Evidence: [HTTIM] High-throughput transcription initiation mapping
[ICWHO] Inferred computationally without human oversight
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates
[TIM] Transcription initiation mapping
[AIPP] Automated inference of promoter position
[IMP] Inferred from mutant phenotype
[HIPP] Human inference of promoter position
[CV(RPF/RS-EPT-CBR)] cross validation(RPF/RS-EPT-CBR)
[RPF] RNA polymerase footprinting
[CV(RPF/TIM)] cross validation(RPF/TIM)
[NTAS] Non-traceable author statement
[ICA] Inferred by computational analysis
[IEP] Inferred from expression pattern
[IHBCE] Inferred by a human based on computational evidence
[TAS] Traceable author statement


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Olvera L., Mendoza-Vargas A., Flores N., Olvera M., Sigala JC., Gosset G., Morett E., Bolivar F., 2009, Transcription analysis of central metabolism genes in Escherichia coli. Possible roles of sigma38 in their expression, as a response to carbon limitation., PLoS One 4(10):e7466

 [3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muńiz-Rascado L, Garcķa-Sotelo JS, Weiss V, Solano-Lira H, Martķnez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernįndez S, Alquicira-Hernįndez K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martķnez C, Balderas-Martķnez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chįvez V, Hernįndez-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [4] Spencer ME., Guest JR., 1985, Transcription analysis of the sucAB, aceEF and lpd genes of Escherichia coli., Mol Gen Genet 200(1):145-54

 [5] Beatty CM., Browning DF., Busby SJ., Wolfe AJ., 2003, Cyclic AMP receptor protein-dependent activation of the Escherichia coli acsP2 promoter by a synergistic class III mechanism., J Bacteriol 185(17):5148-57

 [6] Kumari S., Simel EJ., Wolfe AJ., 2000, sigma(70) is the principal sigma factor responsible for transcription of acs, which encodes acetyl coenzyme A synthetase in Escherichia coli., J Bacteriol 182(2):551-4

 [7] Nakabeppu Y., Sekiguchi M., 1986, Regulatory mechanisms for induction of synthesis of repair enzymes in response to alkylating agents: ada protein acts as a transcriptional regulator., Proc Natl Acad Sci U S A 83(17):6297-301

 [8] Aristarkhov A., Mikulskis A., Belasco JG., Lin EC., 1996, Translation of the adhE transcript to produce ethanol dehydrogenase requires RNase III cleavage in Escherichia coli., J Bacteriol 178(14):4327-32

 [9] Membrillo-Hernandez J., Lin EC., 1999, Regulation of expression of the adhE gene, encoding ethanol oxidoreductase in Escherichia coli: transcription from a downstream promoter and regulation by fnr and RpoS., J Bacteriol 181(24):7571-9

 [10] Brombacher E., Dorel C., Zehnder AJ., Landini P., 2003, The curli biosynthesis regulator CsgD co-ordinates the expression of both positive and negative determinants for biofilm formation in Escherichia coli., Microbiology 149(Pt 10):2847-57

 [11] Weber H., Pesavento C., Possling A., Tischendorf G., Hengge R., 2006, Cyclic-di-GMP-mediated signalling within the sigma network of Escherichia coli., Mol Microbiol 62(4):1014-34

 [12] Landini P., Bown JA., Volkert MR., Busby SJ., 1998, Ada protein-RNA polymerase sigma subunit interaction and alpha subunit-promoter DNA interaction are necessary at different steps in transcription initiation at the Escherichia coli Ada and aidB promoters., J Biol Chem 273(21):13307-12

 [13] Landini P., Hajec LI., Nguyen LH., Burgess RR., Volkert MR., 1996, The leucine-responsive regulatory protein (Lrp) acts as a specific repressor for sigma s-dependent transcription of the Escherichia coli aidB gene., Mol Microbiol 20(5):947-55

 [14] Landini P., Hajec LI., Volkert MR., 1994, Structure and transcriptional regulation of the Escherichia coli adaptive response gene aidB., J Bacteriol 176(21):6583-9

 [15] Maciag A., Peano C., Pietrelli A., Egli T., De Bellis G., Landini P., 2011, In vitro transcription profiling of the σS subunit of bacterial RNA polymerase: re-definition of the σS regulon and identification of σS-specific promoter sequence elements., Nucleic Acids Res 39(13):5338-55

 [16] Volkert MR., Hajec LI., Matijasevic Z., Fang FC., Prince R., 1994, Induction of the Escherichia coli aidB gene under oxygen-limiting conditions requires a functional rpoS (katF) gene., J Bacteriol 176(24):7638-45

 [17] Xu J., Johnson RC., 1995, aldB, an RpoS-dependent gene in Escherichia coli encoding an aldehyde dehydrogenase that is repressed by Fis and activated by Crp., J Bacteriol 177(11):3166-75

 [18] Lai CF., Ripperger J., Wang Y., Kim H., Hawley RB., Baumann H., 1999, The STAT3-independent signaling pathway by glycoprotein 130 in hepatic cells., J Biol Chem 274(12):7793-802

 [19] Landini P., Busby SJ., 1999, The Escherichia coli Ada protein can interact with two distinct determinants in the sigma70 subunit of RNA polymerase according to promoter architecture: identification of the target of Ada activation at the alkA promoter., J Bacteriol 181(5):1524-9

 [20] Lacour S., Landini P., 2004, SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: function of sigmaS-dependent genes and identification of their promoter sequences., J Bacteriol 186(21):7186-95

 [21] Atlung T., Brondsted L., 1994, Role of the transcriptional activator AppY in regulation of the cyx appA operon of Escherichia coli by anaerobiosis, phosphate starvation, and growth phase., J Bacteriol 176(17):5414-22

 [22] Atlung T., Knudsen K., Heerfordt L., Brondsted L., 1997, Effects of sigmaS and the transcriptional activator AppY on induction of the Escherichia coli hya and cbdAB-appA operons in response to carbon and phosphate starvation., J Bacteriol 179(7):2141-6

 [23] Dassa J., Fsihi H., Marck C., Dion M., Kieffer-Bontemps M., Boquet PL., 1991, A new oxygen-regulated operon in Escherichia coli comprises the genes for a putative third cytochrome oxidase and for pH 2.5 acid phosphatase (appA), Mol Gen Genet 229(3):341-52

 [24] Hendrickson W., Stoner C., Schleif R., 1990, Characterization of the Escherichia coli araFGH and araJ promoters., J Mol Biol 215(4):497-510

 [25] Aiso T., Murata M., Gamou S., 2011, Transcription of an antisense RNA of a gadE mRNA is regulated by GadE, the central activator of the acid resistance system in Escherichia coli., Genes Cells 16(6):670-80

 [26] Seputiene V., Suziedelis K., Normark S., Melefors O., Suziedeliene E., 2004, Transcriptional analysis of the acid-inducible asr gene in enterobacteria., Res Microbiol 155(7):535-42

 [27] Suziedeliene E., Suziedelis K., Garbenciute V., Normark S., 1999, The acid-inducible asr gene in Escherichia coli: transcriptional control by the phoBR operon., J Bacteriol 181(7):2084-93

 [28] Fraley CD., Kim JH., McCann MP., Matin A., 1998, The Escherichia coli starvation gene cstC is involved in amino acid catabolism., J Bacteriol 180(16):4287-90

 [29] Kiupakis AK., Reitzer L., 2002, ArgR-independent induction and ArgR-dependent superinduction of the astCADBE operon in Escherichia coli., J Bacteriol 184(11):2940-50

 [30] Bishop RE., Penfold SS., Frost LS., Holtje JV., Weiner JH., 1995, Stationary phase expression of a novel Escherichia coli outer membrane lipoprotein and its relationship with mammalian apolipoprotein D. Implications for the origin of lipocalins., J Biol Chem 270(39):23097-103

 [31] Seo SW., Kim D., O'Brien EJ., Szubin R., Palsson BO., 2015, Decoding genome-wide GadEWX-transcriptional regulatory networks reveals multifaceted cellular responses to acid stress in Escherichia coli., Nat Commun 6:7970

 [32] Wong RS., McMurry LM., Levy SB., 2000, 'Intergenic' blr gene in Escherichia coli encodes a 41-residue membrane protein affecting intrinsic susceptibility to certain inhibitors of peptidoglycan synthesis., Mol Microbiol 37(2):364-70

 [33] Aldea M., Garrido T., Hernandez-Chico C., Vicente M., Kushner SR., 1989, Induction of a growth-phase-dependent promoter triggers transcription of bolA, an Escherichia coli morphogene., EMBO J 8(12):3923-31

 [34] Bohannon DE., Connell N., Keener J., Tormo A., Espinosa-Urgel M., Zambrano MM., Kolter R., 1991, Stationary-phase-inducible "gearbox" promoters: differential effects of katF mutations and role of sigma 70., J Bacteriol 173(14):4482-92

 [35] Kvint K., Farewell A., Nystrom T., 2000, RpoS-dependent promoters require guanosine tetraphosphate for induction even in the presence of high levels of sigma(s)., J Biol Chem 275(20):14795-8

 [36] Nguyen LH., Burgess RR., 1997, Comparative analysis of the interactions of Escherichia coli sigma S and sigma 70 RNA polymerase holoenzyme with the stationary-phase-specific bolAp1 promoter., Biochemistry 36(7):1748-54

 [37] Yamamoto K., Nagura R., Tanabe H., Fujita N., Ishihama A., Utsumi R., 2000, Negative regulation of the bolA1p of Escherichia coli K-12 by the transcription factor OmpR for osmolarity response genes., FEMS Microbiol Lett 186(2):257-62

 [38] Peano C., Wolf J., Demol J., Rossi E., Petiti L., De Bellis G., Geiselmann J., Egli T., Lacour S., Landini P., 2015, Characterization of the Escherichia coli σ(S) core regulon by Chromatin Immunoprecipitation-sequencing (ChIP-seq) analysis., Sci Rep 5:10469

 [39] Chintakayala K., Singh SS., Rossiter AE., Shahapure R., Dame RT., Grainger DC., 2013, E. coli Fis protein insulates the cbpA gene from uncontrolled transcription., PLoS Genet 9(1):e1003152

 [40] Singh SS., Typas A., Hengge R., Grainger DC., 2011, Escherichia coli σā?·ā?° senses sequence and conformation of the promoter spacer region., Nucleic Acids Res 39(12):5109-18

 [41] Yamashino T., Kakeda M., Ueguchi C., Mizuno T., 1994, An analogue of the DnaJ molecular chaperone whose expression is controlled by sigma s during the stationary phase and phosphate starvation in Escherichia coli., Mol Microbiol 13(3):475-83

 [42] Wang AY., Cronan JE., 1994, The growth phase-dependent synthesis of cyclopropane fatty acids in Escherichia coli is the result of an RpoS(KatF)-dependent promoter plus enzyme instability., Mol Microbiol 11(6):1009-17

 [43] De Wulf P., Kwon O., Lin EC., 1999, The CpxRA signal transduction system of Escherichia coli: growth-related autoactivation and control of unanticipated target operons., J Bacteriol 181(21):6772-8

 [44] De Reuse H., Danchin A., 1988, The ptsH, ptsI, and crr genes of the Escherichia coli phosphoenolpyruvate-dependent phosphotransferase system: a complex operon with several modes of transcription., J Bacteriol 170(9):3827-37

 [45] Arnqvist A., Olsen A., Normark S., 1994, Sigma S-dependent growth-phase induction of the csgBA promoter in Escherichia coli can be achieved in vivo by sigma 70 in the absence of the nucleoid-associated protein H-NS., Mol Microbiol 13(6):1021-32

 [46] Bougdour A., Lelong C., Geiselmann J., 2004, Crl, a low temperature-induced protein in Escherichia coli that binds directly to the stationary phase sigma subunit of RNA polymerase., J Biol Chem 279(19):19540-50

 [47] Ogasawara H., Hasegawa A., Kanda E., Miki T., Yamamoto K., Ishihama A., 2007, Genomic SELEX search for target promoters under the control of the PhoQP-RstBA signal relay cascade., J Bacteriol 189(13):4791-9

 [48] Hammar M., Arnqvist A., Bian Z., Olsen A., Normark S., 1995, Expression of two csg operons is required for production of fibronectin- and congo red-binding curli polymers in Escherichia coli K-12., Mol Microbiol 18(4):661-70

 [49] Marschall C., Labrousse V., Kreimer M., Weichart D., Kolb A., Hengge-Aronis R., 1998, Molecular analysis of the regulation of csiD, a carbon starvation-inducible gene in Escherichia coli that is exclusively dependent on sigma s and requires activation by cAMP-CRP., J Mol Biol 276(2):339-53

 [50] Metzner M., Germer J., Hengge R., 2004, Multiple stress signal integration in the regulation of the complex sigma S-dependent csiD-ygaF-gabDTP operon in Escherichia coli., Mol Microbiol 51(3):799-811

 [51] Marschall C., Hengge-Aronis R., 1995, Regulatory characteristics and promoter analysis of csiE, a stationary phase-inducible gene under the control of sigma S and the cAMP-CRP complex in Escherichia coli., Mol Microbiol 18(1):175-84

 [52] Yakhnin H., Yakhnin AV., Baker CS., Sineva E., Berezin I., Romeo T., Babitzke P., 2011, Complex regulation of the global regulatory gene csrA: CsrA-mediated translational repression, transcription from five promoters by Eσ(70) and Eσ(S) , and indirect transcriptional activation by CsrA., Mol Microbiol 81(3):689-704

 [53] Mendoza-Vargas A., Olvera L., Olvera M., Grande R., Vega-Alvarado L., Taboada B., Jimenez-Jacinto V., Salgado H., Juarez K., Contreras-Moreira B., Huerta AM., Collado-Vides J., Morett E., 2009, Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli., PLoS One 4(10):e7526

 [54] De Lay N., Gottesman S., 2009, The Crp-activated small noncoding regulatory RNA CyaR (RyeE) links nutritional status to group behavior., J Bacteriol 191(2):461-76

 [55] Johansen J., Eriksen M., Kallipolitis B., Valentin-Hansen P., 2008, Down-regulation of Outer Membrane Proteins by Noncoding RNAs: Unraveling the cAMP-CRP- and sigma(E)-Dependent CyaR-ompX Regulatory Case., J Mol Biol 383(1):1-9

 [56] Lessard IA., Pratt SD., McCafferty DG., Bussiere DE., Hutchins C., Wanner BL., Katz L., Walsh CT., 1998, Homologs of the vancomycin resistance D-Ala-D-Ala dipeptidase VanX in Streptomyces toyocaensis, Escherichia coli and Synechocystis: attributes of catalytic efficiency, stereoselectivity and regulation with implications for function., Chem Biol 5(9):489-504

 [57] Gama-Castro S., Jimenez-Jacinto V., Peralta-Gil M., Santos-Zavaleta A., Penaloza-Spinola MI., Contreras-Moreira B., Segura-Salazar J., Muniz-Rascado L., Martinez-Flores I., Salgado H., Bonavides-Martinez C., Abreu-Goodger C., Rodriguez-Penagos C., Miranda-Rios J., Morett E., Merino E., Huerta AM., Trevino-Quintanilla L., Collado-Vides J., 2008, RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation., Nucleic Acids Res 36(Database issue):D120-4

 [58] Armengod ME., Garcia-Sogo M., Lambies E., 1988, Transcriptional organization of the dnaN and recF genes of Escherichia coli K-12., J Biol Chem 263(24):12109-14

 [59] Villarroya M., Perez-Roger I., Macian F., Armengod ME., 1998, Stationary phase induction of dnaN and recF, two genes of Escherichia coli involved in DNA replication and repair., EMBO J 17(6):1829-37

 [60] Altuvia S., Almiron M., Huisman G., Kolter R., Storz G., 1994, The dps promoter is activated by OxyR during growth and by IHF and sigma S in stationary phase., Mol Microbiol 13(2):265-72

 [61] Bishop RE., Leskiw BK., Hodges RS., Kay CM., Weiner JH., 1998, The entericidin locus of Escherichia coli and its implications for programmed bacterial cell death., J Mol Biol 280(4):583-96

 [62] Guo Y., Li Y., Zhan W., Wood TK., Wang X., 2019, Resistance to oxidative stress by inner membrane protein ElaB is regulated by OxyR and RpoS., Microb Biotechnol 12(2):392-404

 [63] Guo Y., Liu X., Li B., Yao J., Wood TK., Wang X., 2017, Tail-Anchored Inner Membrane Protein ElaB Increases Resistance to Stress While Reducing Persistence in Escherichia coli., J Bacteriol 199(9)

 [64] Zaslaver A., Bren A., Ronen M., Itzkovitz S., Kikoin I., Shavit S., Liebermeister W., Surette MG., Alon U., 2006, A comprehensive library of fluorescent transcriptional reporters for Escherichia coli., Nat Methods 3(8):623-8

 [65] Bardey V., Vallet C., Robas N., Charpentier B., Thouvenot B., Mougin A., Hajnsdorf E., Regnier P., Springer M., Branlant C., 2005, Characterization of the molecular mechanisms involved in the differential production of erythrose-4-phosphate dehydrogenase, 3-phosphoglycerate kinase and class II fructose-1,6-bisphosphate aldolase in Escherichia coli., Mol Microbiol 57(5):1265-87

 [66] Charpentier B., Bardey V., Robas N., Branlant C., 1998, The EIIGlc protein is involved in glucose-mediated activation of Escherichia coli gapA and gapB-pgk transcription., J Bacteriol 180(24):6476-83

 [67] Tanabe H., Yamasaki K., Katoh A., Yoshioka S., Utsumi R., 1998, Identification of the promoter region and the transcriptional regulatory sequence of the evgAS operon of Escherichia coli., Biosci Biotechnol Biochem 62(2):286-90

 [68] Black PN., 1991, Primary sequence of the Escherichia coli fadL gene encoding an outer membrane protein required for long-chain fatty acid transport., J Bacteriol 173(2):435-42

 [69] Higashitani A., Nishimura Y., Hara H., Aiba H., Mizuno T., Horiuchi K., 1993, Osmoregulation of the fatty acid receptor gene fadL in Escherichia coli., Mol Gen Genet 240(3):339-47

 [70] Jones HM., Gunsalus RP., 1985, Transcription of the Escherichia coli fumarate reductase genes (frdABCD) and their coordinate regulation by oxygen, nitrate, and fumarate., J Bacteriol 164(3):1100-9

 [71] Aldea M., Garrido T., Pla J., Vicente M., 1990, Division genes in Escherichia coli are expressed coordinately to cell septum requirements by gearbox promoters., EMBO J 9(11):3787-94

 [72] Ballesteros M., Kusano S., Ishihama A., Vicente M., 1998, The ftsQ1p gearbox promoter of Escherichia coli is a major sigma S-dependent promoter in the ddlB-ftsA region., Mol Microbiol 30(2):419-30

 [73] Sitnikov DM., Schineller JB., Baldwin TO., 1996, Control of cell division in Escherichia coli: regulation of transcription of ftsQA involves both rpoS and SdiA-mediated autoinduction., Proc Natl Acad Sci U S A 93(1):336-41

 [74] Yamamoto K., Yata K., Fujita N., Ishihama A., 2001, Novel mode of transcription regulation by SdiA, an Escherichia coli homologue of the quorum-sensing regulator., Mol Microbiol 41(5):1187-98

 [75] Cunningham L., Gruer MJ., Guest JR., 1997, Transcriptional regulation of the aconitase genes (acnA and acnB) of Escherichia coli., Microbiology 143 ( Pt 12):3795-805

 [76] Park SJ., Gunsalus RP., 1995, Oxygen, iron, carbon, and superoxide control of the fumarase fumA and fumC genes of Escherichia coli: role of the arcA, fnr, and soxR gene products., J Bacteriol 177(21):6255-62

 [77] Schneider BL., Ruback S., Kiupakis AK., Kasbarian H., Pybus C., Reitzer L., 2002, The Escherichia coli gabDTPC operon: specific gamma-aminobutyrate catabolism and nonspecific induction., J Bacteriol 184(24):6976-86

 [78] Castanie-Cornet MP., Foster JW., 2001, Escherichia coli acid resistance: cAMP receptor protein and a 20 bp cis-acting sequence control pH and stationary phase expression of the gadA and gadBC glutamate decarboxylase genes., Microbiology 147(Pt 3):709-15

 [79] Itou J., Eguchi Y., Utsumi R., 2009, Molecular mechanism of transcriptional cascade initiated by the EvgS/EvgA system in Escherichia coli K-12., Biosci Biotechnol Biochem 73(4):870-8

 [80] Waterman SR., Small PL., 2003, Transcriptional expression of Escherichia coli glutamate-dependent acid resistance genes gadA and gadBC in an hns rpoS mutant., J Bacteriol 185(15):4644-7

 [81] Ma Z., Masuda N., Foster JW., 2004, Characterization of EvgAS-YdeO-GadE branched regulatory circuit governing glutamate-dependent acid resistance in Escherichia coli., J Bacteriol 186(21):7378-89

 [82] Hommais F., Krin E., Coppee JY., Lacroix C., Yeramian E., Danchin A., Bertin P., 2004, GadE (YhiE): a novel activator involved in the response to acid environment in Escherichia coli., Microbiology 150(Pt 1):61-72

 [83] Sayed AK., Foster JW., 2009, A 750 bp sensory integration region directs global control of the Escherichia coli GadE acid resistance regulator., Mol Microbiol 71(6):1435-50

 [84] Tramonti A., Visca P., De Canio M., Falconi M., De Biase D., 2002, Functional characterization and regulation of gadX, a gene encoding an AraC/XylS-like transcriptional activator of the Escherichia coli glutamic acid decarboxylase system., J Bacteriol 184(10):2603-13

 [85] Opdyke JA., Kang JG., Storz G., 2004, GadY, a small-RNA regulator of acid response genes in Escherichia coli., J Bacteriol 186(20):6698-705

 [86] Colland F., Fujita N., Kotlarz D., Bown JA., Meares CF., Ishihama A., Kolb A., 1999, Positioning of sigma(S), the stationary phase sigma factor, in Escherichia coli RNA polymerase-promoter open complexes., EMBO J 18(14):4049-59

 [87] Musso RE., de Crombrugghe B., Pastan I., Sklar J., Yot P., Weissman S., 1974, The 5'-terminal nucleotide sequence of galactose messenger ribonucleic acid of Escherichia coli., Proc Natl Acad Sci U S A 71(12):4940-4

 [88] Sur R., Debnath D., Mukhopadhyay J., Parrack P., 2001, A novel RNA polymerase binding site upstream of the galactose promoter in Escherichia coli exhibits promoter-like activity., Eur J Biochem 268(8):2344-50

 [89] Tanaka K., Kusano S., Fujita N., Ishihama A., Takahashi H., 1995, Promoter determinants for Escherichia coli RNA polymerase holoenzyme containing sigma 38 (the rpoS gene product)., Nucleic Acids Res 23(5):827-34

 [90] Charpentier B., Branlant C., 1994, The Escherichia coli gapA gene is transcribed by the vegetative RNA polymerase holoenzyme E sigma 70 and by the heat shock RNA polymerase E sigma 32., J Bacteriol 176(3):830-9

 [91] Thouvenot B., Charpentier B., Branlant C., 2004, The strong efficiency of the Escherichia coli gapA P1 promoter depends on a complex combination of functional determinants., Biochem J 383(Pt 2):371-82

 [92] Romeo T., Preiss J., 1989, Genetic regulation of glycogen biosynthesis in Escherichia coli: in vitro effects of cyclic AMP and guanosine 5'-diphosphate 3'-diphosphate and analysis of in vivo transcripts., J Bacteriol 171(5):2773-82

 [93] Hengge-Aronis R., Fischer D., 1992, Identification and molecular analysis of glgS, a novel growth-phase-regulated and rpoS-dependent gene involved in glycogen synthesis in Escherichia coli., Mol Microbiol 6(14):1877-86

 [94] Meyer D., Schneider-Fresenius C., Horlacher R., Peist R., Boos W., 1997, Molecular characterization of glucokinase from Escherichia coli K-12., J Bacteriol 179(4):1298-306

 [95] Petersen C., Moller LB., 2000, Control of copper homeostasis in Escherichia coli by a P-type ATPase, CopA, and a MerR-like transcriptional activator, CopR., Gene 261(2):289-98

 [96] Oliver G., Gosset G., Sanchez-Pescador R., Lozoya E., Ku LM., Flores N., Becerril B., Valle F., Bolivar F., 1987, Determination of the nucleotide sequence for the glutamate synthase structural genes of Escherichia coli K-12., Gene 60(1):1-11

 [97] Velazquez L., Camarena L., Reyes JL., Bastarrachea F., 1991, Mutations affecting the Shine-Dalgarno sequences of the untranslated region of the Escherichia coli gltBDF operon., J Bacteriol 173(10):3261-4

 [98] Vassinova N., Kozyrev D., 2000, A method for direct cloning of fur-regulated genes: identification of seven new fur-regulated loci in Escherichia coli., Microbiology 146 Pt 12:3171-3182

 [99] Adachi T., Mizuuchi K., Menzel R., Gellert M., 1984, DNA sequence and transcription of the region upstream of the E. coli gyrB gene., Nucleic Acids Res 12(16):6389-95

 [100] Menzel R., Gellert M., 1987, Modulation of transcription by DNA supercoiling: a deletion analysis of the Escherichia coli gyrA and gyrB promoters., Proc Natl Acad Sci U S A 84(12):4185-9

 [101] Mujacic M., Baneyx F., 2006, Regulation of Escherichia coli hchA, a stress-inducible gene encoding molecular chaperone Hsp31., Mol Microbiol 60(6):1576-89

 [102] Dudin O., Lacour S., Geiselmann J., 2013, Expression dynamics of RpoS/Crl-dependent genes in Escherichia coli., Res Microbiol 164(8):838-47

 [103] Membrillo-Hernandez J., Cook GM., Poole RK., 1997, Roles of RpoS (sigmaS), IHF and ppGpp in the expression of the hmp gene encoding the flavohemoglobin (Hmp) of Escherichia coli K-12., Mol Gen Genet 254(5):599-603

 [104] Plamann MD., Stauffer GV., 1983, Characterization of the Escherichia coli gene for serine hydroxymethyltransferase., Gene 22(1):9-18

 [105] Richard DJ., Sawers G., Sargent F., McWalter L., Boxer DH., 1999, Transcriptional regulation in response to oxygen and nitrate of the operons encoding the [NiFe] hydrogenases 1 and 2 of Escherichia coli., Microbiology 145 ( Pt 10):2903-12

 [106] Merrikh H., Ferrazzoli AE., Lovett ST., 2009, Growth phase and (p)ppGpp control of IraD, a regulator of RpoS stability, in Escherichia coli., J Bacteriol 191(24):7436-46

 [107] Aviv M., Giladi H., Schreiber G., Oppenheim AB., Glaser G., 1994, Expression of the genes coding for the Escherichia coli integration host factor are controlled by growth phase, rpoS, ppGpp and by autoregulation., Mol Microbiol 14(5):1021-31

 [108] Mechulam Y., Blanquet S., Fayat G., 1987, Dual level control of the Escherichia coli pheST-himA operon expression. tRNA(Phe)-dependent attenuation and transcriptional operator-repressor control by himA and the SOS network., J Mol Biol 197(3):453-70

 [109] Weglenska A., Jacob B., Sirko A., 1996, Transcriptional pattern of Escherichia coli ihfB (himD) gene expression., Gene 181(1-2):85-8

 [110] Opel ML., Hatfield GW., 2001, DNA supercoiling-dependent transcriptional coupling between the divergently transcribed promoters of the ilvYC operon of Escherichia coli is proportional to promoter strengths and transcript lengths., Mol Microbiol 39(1):191-8

 [111] Rhee KY., Opel M., Ito E., Hung Sp., Arfin SM., Hatfield GW., 1999, Transcriptional coupling between the divergent promoters of a prototypic LysR-type regulatory system, the ilvYC operon of Escherichia coli., Proc Natl Acad Sci U S A 96(25):14294-9

 [112] Wek RC., Hatfield GW., 1986, Nucleotide sequence and in vivo expression of the ilvY and ilvC genes in Escherichia coli K12. Transcription from divergent overlapping promoters., J Biol Chem 261(5):2441-50

 [113] Tanaka K., Handel K., Loewen PC., Takahashi H., 1997, Identification and analysis of the rpoS-dependent promoter of katE, encoding catalase HPII in Escherichia coli., Biochim Biophys Acta 1352(2):161-6

 [114] von Ossowski I., Mulvey MR., Leco PA., Borys A., Loewen PC., 1991, Nucleotide sequence of Escherichia coli katE, which encodes catalase HPII., J Bacteriol 173(2):514-20

 [115] Kikuchi Y., Kojima H., Tanaka T., Takatsuka Y., Kamio Y., 1997, Characterization of a second lysine decarboxylase isolated from Escherichia coli., J Bacteriol 179(14):4486-92

 [116] Kikuchi Y., Kurahashi O., Nagano T., Kamio Y., 1998, RpoS-dependent expression of the second lysine decarboxylase gene in Escherichia coli., Biosci Biotechnol Biochem 62(6):1267-70

 [117] Yamamoto Y., Miwa Y., Miyoshi K., Furuyama J., Ohmori H., 1997, The Escherichia coli ldcC gene encodes another lysine decarboxylase, probably a constitutive enzyme., Genes Genet Syst 72(3):167-72

 [118] Wang L., Hashimoto Y., Tsao CY., Valdes JJ., Bentley WE., 2005, Cyclic AMP (cAMP) and cAMP receptor protein influence both synthesis and uptake of extracellular autoinducer 2 in Escherichia coli., J Bacteriol 187(6):2066-76

 [119] Xavier KB., Bassler BL., 2005, Regulation of uptake and processing of the quorum-sensing autoinducer AI-2 in Escherichia coli., J Bacteriol 187(1):238-48

 [120] Udekwu KI., 2010, Transcriptional and post-transcriptional regulation of the Escherichia coli luxS mRNA; involvement of the sRNA MicA., PLoS One 5(10):e13449

 [121] Wei Y., Newman EB., 2002, Studies on the role of the metK gene product of Escherichia coli K-12., Mol Microbiol 43(6):1651-6

 [122] Hogg RW., Voelker C., Von Carlowitz I., 1991, Nucleotide sequence and analysis of the mgl operon of Escherichia coli K12., Mol Gen Genet 229(3):453-9

 [123] Notley-McRobb L., King T., Ferenci T., 2002, rpoS mutations and loss of general stress resistance in Escherichia coli populations as a consequence of conflict between competing stress responses., J Bacteriol 184(3):806-11

 [124] Andersen J., Delihas N., Ikenaka K., Green PJ., Pines O., Ilercil O., Inouye M., 1987, The isolation and characterization of RNA coded by the micF gene in Escherichia coli., Nucleic Acids Res 15(5):2089-101

 [125] Pesavento C., Hengge R., 2012, The global repressor FliZ antagonizes gene expression by σS-containing RNA polymerase due to overlapping DNA binding specificity., Nucleic Acids Res 40(11):4783-93

 [126] Kolling R., Gielow A., Seufert W., Kucherer C., Messer W., 1988, AsnC, a multifunctional regulator of genes located around the replication origin of Escherichia coli, oriC., Mol Gen Genet 212(1):99-104

 [127] Talukder AA., Yanai S., Nitta T., Kato A., Yamada M., 1996, RpoS-dependent regulation of genes expressed at late stationary phase in Escherichia coli., FEBS Lett 386(2-3):177-80

 [128] Kim Y., Lew CM., Gralla JD., 2006, Escherichia coli pfs transcription: regulation and proposed roles in autoinducer-2 synthesis and purine excretion., J Bacteriol 188(21):7457-63

 [129] Jaeger T., Mayer C., 2008, The transcriptional factors MurR and catabolite activator protein regulate N-acetylmuramic acid catabolism in Escherichia coli., J Bacteriol 190(20):6598-608

 [130] Tsui HC., Feng G., Winkler ME., 1997, Negative regulation of mutS and mutH repair gene expression by the Hfq and RpoS global regulators of Escherichia coli K-12., J Bacteriol 179(23):7476-87

 [131] Chang L., Wei LI., Audia JP., Morton RA., Schellhorn HE., 1999, Expression of the Escherichia coli NRZ nitrate reductase is highly growth phase dependent and is controlled by RpoS, the alternative vegetative sigma factor., Mol Microbiol 34(4):756-66

 [132] Dover N., Padan E., 2001, Transcription of nhaA, the main Na(+)/H(+) antiporter of Escherichia coli, is regulated by Na(+) and growth phase., J Bacteriol 183(2):644-53

 [133] Inokuchi K., Furukawa H., Nakamura K., Mizushima S., 1984, Characterization by deletion mutagenesis in vitro of the promoter region of ompF, a positively regulated gene of Escherichia coli., J Mol Biol 178(3):653-68

 [134] Boulanger A., Francez-Charlot A., Conter A., Castanie-Cornet MP., Cam K., Gutierrez C., 2005, Multistress regulation in Escherichia coli: expression of osmB involves two independent promoters responding either to sigmaS or to the RcsCDB His-Asp phosphorelay., J Bacteriol 187(9):3282-6

 [135] Ding Q., Kusano S., Villarejo M., Ishihama A., 1995, Promoter selectivity control of Escherichia coli RNA polymerase by ionic strength: differential recognition of osmoregulated promoters by E sigma D and E sigma S holoenzymes., Mol Microbiol 16(4):649-56

 [136] Jung JU., Gutierrez C., Martin F., Ardourel M., Villarejo M., 1990, Transcription of osmB, a gene encoding an Escherichia coli lipoprotein, is regulated by dual signals. Osmotic stress and stationary phase., J Biol Chem 265(18):10574-81

 [137] Jung JU., Gutierrez C., Villarejo MR., 1989, Sequence of an osmotically inducible lipoprotein gene., J Bacteriol 171(1):511-20

 [138] Bordes P., Repoila F., Kolb A., Gutierrez C., 2000, Involvement of differential efficiency of transcription by esigmas and esigma70 RNA polymerase holoenzymes in growth phase regulation of the Escherichia coli osmE promoter., Mol Microbiol 35(4):845-53

 [139] Bouvier J., Gordia S., Kampmann G., Lange R., Hengge-Aronis R., Gutierrez C., 1998, Interplay between global regulators of Escherichia coli: effect of RpoS, Lrp and H-NS on transcription of the gene osmC., Mol Microbiol 28(5):971-80

 [140] Gordia S., Gutierrez C., 1996, Growth-phase-dependent expression of the osmotically inducible gene osmC of Escherichia coli K-12., Mol Microbiol 19(4):729-36

 [141] Gutierrez C., Devedjian JC., 1991, Osmotic induction of gene osmC expression in Escherichia coli K12., J Mol Biol 220(4):959-73

 [142] Bordes P., Bouvier J., Conter A., Kolb A., Gutierrez C., 2002, Transient repressor effect of Fis on the growth phase-regulated osmE promoter of Escherichia coli K12., Mol Genet Genomics 268(2):206-13

 [143] Conter A., Menchon C., Gutierrez C., 1997, Role of DNA supercoiling and rpoS sigma factor in the osmotic and growth phase-dependent induction of the gene osmE of Escherichia coli K12., J Mol Biol 273(1):75-83

 [144] Gutierrez C., Gordia S., Bonnassie S., 1995, Characterization of the osmotically inducible gene osmE of Escherichia coli K-12., Mol Microbiol 16(3):553-63

 [145] Checroun C., Gutierrez C., 2004, Sigma(s)-dependent regulation of yehZYXW, which encodes a putative osmoprotectant ABC transporter of Escherichia coli., FEMS Microbiol Lett 236(2):221-6

 [146] Lange R., Barth M., Hengge-Aronis R., 1993, Complex transcriptional control of the sigma s-dependent stationary-phase-induced and osmotically regulated osmY (csi-5) gene suggests novel roles for Lrp, cyclic AMP (cAMP) receptor protein-cAMP complex, and integration host factor in the stationary-phase response of Escherichia coli., J Bacteriol 175(24):7910-7

 [147] Wise A., Brems R., Ramakrishnan V., Villarejo M., 1996, Sequences in the -35 region of Escherichia coli rpoS-dependent genes promote transcription by E sigma S., J Bacteriol 178(10):2785-93

 [148] Yim HH., Brems RL., Villarejo M., 1994, Molecular characterization of the promoter of osmY, an rpoS-dependent gene., J Bacteriol 176(1):100-7

 [149] Hengge-Aronis R., Klein W., Lange R., Rimmele M., Boos W., 1991, Trehalose synthesis genes are controlled by the putative sigma factor encoded by rpoS and are involved in stationary-phase thermotolerance in Escherichia coli., J Bacteriol 173(24):7918-24

 [150] Kaasen I., McDougall J., Strom AR., 1994, Analysis of the otsBA operon for osmoregulatory trehalose synthesis in Escherichia coli and homology of the OtsA and OtsB proteins to the yeast trehalose-6-phosphate synthase/phosphatase complex., Gene 145(1):9-15

 [151] Becker G., Hengge-Aronis R., 2001, What makes an Escherichia coli promoter sigma(S) dependent? Role of the -13/-14 nucleotide promoter positions and region 2.5 of sigma(S)., Mol Microbiol 39(5):1153-65

 [152] Rosenthal AZ., Hu M., Gralla JD., 2006, Osmolyte-induced transcription: -35 region elements and recognition by sigma38 (rpoS)., Mol Microbiol 59(3):1052-61

 [153] Christman MF., Storz G., Ames BN., 1989, OxyR, a positive regulator of hydrogen peroxide-inducible genes in Escherichia coli and Salmonella typhimurium, is homologous to a family of bacterial regulatory proteins., Proc Natl Acad Sci U S A 86(10):3484-8

 [154] Gonzalez-Flecha B., Demple B., 1997, Transcriptional regulation of the Escherichia coli oxyR gene as a function of cell growth., J Bacteriol 179(19):6181-6

 [155] Samsonova NN., Smirnov SV., Altman IB., Ptitsyn LR., 2003, Molecular cloning and characterization of Escherichia coli K12 ygjG gene., BMC Microbiol 3(1):2

 [156] Binns N., Masters M., 2002, Expression of the Escherichia coli pcnB gene is translationally limited using an inefficient start codon: a second chromosomal example of translation initiated at AUU., Mol Microbiol 44(5):1287-98

 [157] Jasiecki J., Wegrzyn G., 2006, Transcription start sites in the promoter region of the Escherichia coli pcnB (plasmid copy number) gene coding for poly(A) polymerase I., Plasmid 55(2):169-72

 [158] Nadratowska-Wesolowska B., Slominska-Wojewodzka M., Lyzen R., Wegrzyn A., Szalewska-Palasz A., Wegrzyn G., 2010, Transcription regulation of the Escherichia coli pcnB gene coding for poly(A) polymerase I: roles of ppGpp, DksA and sigma factors., Mol Genet Genomics 284(4):289-305

 [159] Cairrao F., Chora A., Zilhao R., Carpousis AJ., Arraiano CM., 2001, RNase II levels change according to the growth conditions: characterization of gmr, a new Escherichia coli gene involved in the modulation of RNase II., Mol Microbiol 39(6):1550-61

 [160] Cunningham L., Guest JR., 1998, Transcription and transcript processing in the sdhCDAB-sucABCD operon of Escherichia coli., Microbiology 144 ( Pt 8):2113-23

 [161] Quail MA., Guest JR., 1995, Purification, characterization and mode of action of PdhR, the transcriptional repressor of the pdhR-aceEF-lpd operon of Escherichia coli., Mol Microbiol 15(3):519-29

 [162] Crooke H., Cole J., 1995, The biogenesis of c-type cytochromes in Escherichia coli requires a membrane-bound protein, DipZ, with a protein disulphide isomerase-like domain., Mol Microbiol 15(6):1139-50

 [163] Hellinga HW., Evans PR., 1985, Nucleotide sequence and high-level expression of the major Escherichia coli phosphofructokinase., Eur J Biochem 149(2):363-73

 [164] Daldal F., 1984, Nucleotide sequence of gene pfkB encoding the minor phosphofructokinase of Escherichia coli K-12., Gene 28(3):337-42

 [165] Daldal F., 1983, Molecular cloning of the gene for phosphofructokinase-2 of Escherichia coli and the nature of a mutation, pfkB1, causing a high level of the enzyme., J Mol Biol 168(2):285-305

 [166] Froman BE., Tait RC., Gottlieb LD., 1989, Isolation and characterization of the phosphoglucose isomerase gene from Escherichia coli., Mol Gen Genet 217(1):126-31

 [167] Chang YY., Wang AY., Cronan JE., 1994, Expression of Escherichia coli pyruvate oxidase (PoxB) depends on the sigma factor encoded by the rpoS(katF) gene., Mol Microbiol 11(6):1019-28

 [168] Koh YS., Roe JH., 1996, Dual regulation of the paraquat-inducible gene pqi-5 by SoxS and RpoS in Escherichia coli., Mol Microbiol 22(1):53-61

 [169] Koh YS., Roe JH., 1995, Isolation of a novel paraquat-inducible (pqi) gene regulated by the soxRS locus in Escherichia coli., J Bacteriol 177(10):2673-8

 [170] Eguchi Y., Okada T., Minagawa S., Oshima T., Mori H., Yamamoto K., Ishihama A., Utsumi R., 2004, Signal transduction cascade between EvgA/EvgS and PhoP/PhoQ two-component systems of Escherichia coli., J Bacteriol 186(10):3006-14

 [171] Mellies J., Wise A., Villarejo M., 1995, Two different Escherichia coli proP promoters respond to osmotic and growth phase signals., J Bacteriol 177(1):144-51

 [172] Xu J., Johnson RC., 1995, Fis activates the RpoS-dependent stationary-phase expression of proP in Escherichia coli., J Bacteriol 177(18):5222-31

 [173] Gowrishankar J., 1989, Nucleotide sequence of the osmoregulatory proU operon of Escherichia coli., J Bacteriol 171(4):1923-31

 [174] Rajkumari K., Kusano S., Ishihama A., Mizuno T., Gowrishankar J., 1996, Effects of H-NS and potassium glutamate on sigmaS- and sigma70-directed transcription in vitro from osmotically regulated P1 and P2 promoters of proU in Escherichia coli., J Bacteriol 178(14):4176-81

 [175] Spira B., Aguena M., de Castro Oliveira JV., Yagil E., 2010, Alternative promoters in the pst operon of Escherichia coli., Mol Genet Genomics 284(6):489-98

 [176] Aguena M., Yagil E., Spira B., 2002, Transcriptional analysis of the pst operon of Escherichia coli., Mol Genet Genomics 268(4):518-24

 [177] Magota K., Otsuji N., Miki T., Horiuchi T., Tsunasawa S., Kondo J., Sakiyama F., Amemura M., Morita T., Shinagawa H., 1984, Nucleotide sequence of the phoS gene, the structural gene for the phosphate-binding protein of Escherichia coli., J Bacteriol 157(3):909-17

 [178] Makino K., Shinagawa H., Amemura M., Kimura S., Nakata A., Ishihama A., 1988, Regulation of the phosphate regulon of Escherichia coli. Activation of pstS transcription by PhoB protein in vitro., J Mol Biol 203(1):85-95

 [179] Surin BP., Jans DA., Fimmel AL., Shaw DC., Cox GB., Rosenberg H., 1984, Structural gene for the phosphate-repressible phosphate-binding protein of Escherichia coli has its own promoter: complete nucleotide sequence of the phoS gene., J Bacteriol 157(3):772-8

 [180] Taschner NP., Yagil E., Spira B., 2004, A differential effect of sigmaS on the expression of the PHO regulon genes of Escherichia coli., Microbiology 150(Pt 9):2985-92

 [181] Nemoto N., Kurihara S., Kitahara Y., Asada K., Kato K., Suzuki H., 2012, Mechanism for regulation of the putrescine utilization pathway by the transcription factor PuuR in Escherichia coli K-12., J Bacteriol 194(13):3437-47

 [182] Typas A., Becker G., Hengge R., 2007, The molecular basis of selective promoter activation by the sigmaS subunit of RNA polymerase., Mol Microbiol 63(5):1296-306

 [183] Egan SM., Schleif RF., 1993, A regulatory cascade in the induction of rhaBAD., J Mol Biol 234(1):87-98

 [184] Tobin JF., Schleif RF., 1990, Transcription from the rha operon psr promoter., J Mol Biol 211(1):1-4

 [185] Tobin JF., Schleif RF., 1990, Purification and properties of RhaR, the positive regulator of the L-rhamnose operons of Escherichia coli., J Mol Biol 211(1):75-89

 [186] Tobin JF., Schleif RF., 1987, Positive regulation of the Escherichia coli L-rhamnose operon is mediated by the products of tandemly repeated regulatory genes., J Mol Biol 196(4):789-99

 [187] Klein G., Stupak A., Biernacka D., Wojtkiewicz P., Lindner B., Raina S., 2016, Multiple Transcriptional Factors Regulate Transcription of the rpoE Gene in Escherichia coli under Different Growth Conditions and When the Lipopolysaccharide Biosynthesis Is Defective., J Biol Chem 291(44):22999-23019

 [188] Erickson JW., Vaughn V., Walter WA., Neidhardt FC., Gross CA., 1987, Regulation of the promoters and transcripts of rpoH, the Escherichia coli heat shock regulatory gene., Genes Dev 1(5):419-32

 [189] Fujita N., Ishihama A., 1987, Heat-shock induction of RNA polymerase sigma-32 synthesis in Escherichia coli: transcriptional control and a multiple promoter system., Mol Gen Genet 210(1):10-5

 [190] Janaszak A., Nadratowska-Wesolowska B., Konopa G., Taylor A., 2009, The P1 promoter of the Escherichia coli rpoH gene is utilized by sigma 70 -RNAP or sigma s -RNAP depending on growth phase., FEMS Microbiol Lett 291(1):65-72

 [191] Kallipolitis BH., Valentin-Hansen P., 1998, Transcription of rpoH, encoding the Escherichia coli heat-shock regulator sigma32, is negatively controlled by the cAMP-CRP/CytR nucleoprotein complex., Mol Microbiol 29(4):1091-9

 [192] Yamamoto K., Ishihama A., 2005, Transcriptional response of Escherichia coli to external zinc., J Bacteriol 187(18):6333-40

 [193] Zhao M., Zhou L., Kawarasaki Y., Georgiou G., 2006, Regulation of RraA, a protein inhibitor of RNase E-mediated RNA decay., J Bacteriol 188(9):3257-63

 [194] Jishage M., Ishihama A., 1999, Transcriptional organization and in vivo role of the Escherichia coli rsd gene, encoding the regulator of RNA polymerase sigma D., J Bacteriol 181(12):3768-76

 [195] Pruteanu M., Hengge-Aronis R., 2002, The cellular level of the recognition factor RssB is rate-limiting for sigmaS proteolysis: implications for RssB regulation and signal transduction in sigmaS turnover in Escherichia coli., Mol Microbiol 45(6):1701-13

 [196] Ruiz N., Peterson CN., Silhavy TJ., 2001, RpoS-dependent transcriptional control of sprE: regulatory feedback loop., J Bacteriol 183(20):5974-81

 [197] Argaman L., Hershberg R., Vogel J., Bejerano G., Wagner EG., Margalit H., Altuvia S., 2001, Novel small RNA-encoding genes in the intergenic regions of Escherichia coli., Curr Biol 11(12):941-50

 [198] Hao Y., Updegrove TB., Livingston NN., Storz G., 2016, Protection against deleterious nitrogen compounds: role of σS-dependent small RNAs encoded adjacent to sdiA., Nucleic Acids Res 44(14):6935-48

 [199] Choi JS., Park H., Kim W., Lee Y., 2019, Coordinate regulation of the expression of SdsR toxin and its downstream pphA gene by RyeA antitoxin in Escherichia coli., Sci Rep 9(1):9627

 [200] Vogel J., Bartels V., Tang TH., Churakov G., Slagter-Jager JG., Huttenhofer A., Wagner EG., 2003, RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria., Nucleic Acids Res 31(22):6435-43

 [201] Vanderpool CK., Gottesman S., 2004, Involvement of a novel transcriptional activator and small RNA in post-transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase system., Mol Microbiol 54(4):1076-89

 [202] Imlay KR., Imlay JA., 1996, Cloning and analysis of sodC, encoding the copper-zinc superoxide dismutase of Escherichia coli., J Bacteriol 178(9):2564-71

 [203] Szumanski MB., Boyle SM., 1990, Analysis and sequence of the speB gene encoding agmatine ureohydrolase, a putrescine biosynthetic enzyme in Escherichia coli., J Bacteriol 172(2):538-47

 [204] Boyle SM., Barroso L., Moore RC., Wright JM., Patel T., 1994, Primary structure of the speC gene encoding biosynthetic ornithine decarboxylase in Escherichia coli., Gene 151(1-2):157-60

 [205] Izutsu K., Wada C., Komine Y., Sako T., Ueguchi C., Nakura S., Wada A., 2001, Escherichia coli ribosome-associated protein SRA, whose copy number increases during stationary phase., J Bacteriol 183(9):2765-73

 [206] Hsu LM., Zagorski J., Wang Z., Fournier MJ., 1985, Escherichia coli 6S RNA gene is part of a dual-function transcription unit., J Bacteriol 161(3):1162-70

 [207] Kim KS., Lee Y., 2004, Regulation of 6S RNA biogenesis by switching utilization of both sigma factors and endoribonucleases., Nucleic Acids Res 32(20):6057-68

 [208] Jung IL., Phyo KH., Kim IG., 2005, RpoS-mediated growth-dependent expression of the Escherichia coli tkt genes encoding transketolases isoenzymes., Curr Microbiol 50(6):314-8

 [209] Zhang A., Rosner JL., Martin RG., 2008, Transcriptional activation by MarA, SoxS and Rob of two tolC promoters using one binding site: a complex promoter configuration for tolC in Escherichia coli., Mol Microbiol 69(6):1450-5

 [210] Qi H., Menzel R., Tse-Dinh YC., 1997, Regulation of Escherichia coli topA gene transcription: involvement of a sigmaS-dependent promoter., J Mol Biol 267(3):481-9

 [211] Repoila F., Gutierrez C., 1991, Osmotic induction of the periplasmic trehalase in Escherichia coli K12: characterization of the treA gene promoter., Mol Microbiol 5(3):747-55

 [212] Farewell A., Kvint K., Nystrom T., 1998, uspB, a new sigmaS-regulated gene in Escherichia coli which is required for stationary-phase resistance to ethanol., J Bacteriol 180(23):6140-7

 [213] Seeger C., Poulsen C., Dandanell G., 1995, Identification and characterization of genes (xapA, xapB, and xapR) involved in xanthosine catabolism in Escherichia coli., J Bacteriol 177(19):5506-16

 [214] Saporito SM., Smith-White BJ., Cunningham RP., 1988, Nucleotide sequence of the xth gene of Escherichia coli K-12., J Bacteriol 170(10):4542-7

 [215] Vvedenskaya IO., Sharp JS., Goldman SR., Kanabar PN., Livny J., Dove SL., Nickels BE., 2012, Growth phase-dependent control of transcription start site selection and gene expression by nanoRNAs., Genes Dev 26(13):1498-507

 [216] Raina S., Missiakas D., Baird L., Kumar S., Georgopoulos C., 1993, Identification and transcriptional analysis of the Escherichia coli htrE operon which is homologous to pap and related pilin operons., J Bacteriol 175(16):5009-21

 [217] Ma C., Rupert CS., 1995, Promoters of the phr gene in Escherichia coli K-12., Mol Gen Genet 248(1):52-8

 [218] Tschowri N., Lindenberg S., Hengge R., 2012, Molecular function and potential evolution of the biofilm-modulating blue light-signalling pathway of Escherichia coli., Mol Microbiol 85(5):893-906

 [219] Stoltzfus A., Leslie JF., Milkman R., 1988, Molecular evolution of the Escherichia coli chromosome. I. Analysis of structure and natural variation in a previously uncharacterized region between trp and tonB., Genetics 120(2):345-58

 [220] Elgrably-Weiss M., Schlosser-Silverman E., Rosenshine I., Altuvia S., 2006, DeoT, a DeoR-type transcriptional regulator of multiple target genes., FEMS Microbiol Lett 254(1):141-148

 [221] Schneider BL., Hernandez VJ., Reitzer L., 2013, Putrescine catabolism is a metabolic response to several stresses in Escherichia coli., Mol Microbiol 88(3):537-50

 [222] Tsyrenzhapova IS., Doroshenko VG., Airikh LG., Mironov AS., Mashko SV., 2009, [Gene yddG of Escherichia coli encoding the putative exporter of aromatic amino acids: constitutive transcription and dependence of the expression level on the cell growth rate], Genetika 45(5):601-9

 [223] Partridge JD., Browning DF., Xu M., Newnham LJ., Scott C., Roberts RE., Poole RK., Green J., 2008, Characterization of the Escherichia coli K-12 ydhYVWXUT operon: regulation by FNR, NarL and NarP., Microbiology 154(Pt 2):608-18

 [224] Anjum MF., Green J., Guest JR., 2000, YeiL, the third member of the CRP-FNR family in Escherichia coli., Microbiology 146 Pt 12:3157-70

 [225] Hiratsu K., Shinagawa H., Makino K., 1995, Mode of promoter recognition by the Escherichia coli RNA polymerase holoenzyme containing the sigma S subunit: identification of the recognition sequence of the fic promoter., Mol Microbiol 18(5):841-50

 [226] Tran PV., Bannor TA., Doktor SZ., Nichols BP., 1990, Chromosomal organization and expression of Escherichia coli pabA., J Bacteriol 172(1):397-410

 [227] Utsumi R., Kusafuka S., Nakayama T., Tanaka K., Takayanagi Y., Takahashi H., Noda M., Kawamukai M., 1993, Stationary phase-specific expression of the fic gene in Escherichia coli K-12 is controlled by the rpoS gene product (sigma 38)., FEMS Microbiol Lett 113(3):273-8

 [228] Mohanty BK., Kushner SR., 1999, Residual polyadenylation in poly(A) polymerase I (pcnB ) mutants of Escherichia coli does not result from the activity encoded by the f310 gene., Mol Microbiol 34(5):1109-19

 [229] Raghavan R., Sage A., Ochman H., 2011, Genome-wide identification of transcription start sites yields a novel thermosensing RNA and new cyclic AMP receptor protein-regulated genes in Escherichia coli., J Bacteriol 193(11):2871-4

 [230] Kraxenberger T., Fried L., Behr S., Jung K., 2012, First insights into the unexplored two-component system YehU/YehT in Escherichia coli., J Bacteriol 194(16):4272-84

 [231] Kang Y., Weber KD., Qiu Y., Kiley PJ., Blattner FR., 2005, Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown function., J Bacteriol 187(3):1135-60

 [232] Xu M., Busby SJ., Browning DF., 2009, Activation and repression at the Escherichia coli ynfEFGHI operon promoter., J Bacteriol 191(9):3172-6

RegulonDB