RegulonDB RegulonDB 11.1: Sigmulon Form
   

Sigma54 Sigmulon in Escherichia coli K-12 genome




Sigma Factor      
Name: Sigma54     
Synonyms: RpoN
Gene name: rpoN
Sigmulon regulators:
Sigmulon Genes:


Transcribed promoters    
  Promoter Name TSS Position Transcribed Gene(s) Distance from TSS
to gene		 Promoter Sequence Box
(-12) 		Box
(-24) 		Evidence Code(s) Reference(s)
  acrDp2 2587550 acrD 45 atttacattaactcctttttttctccacgattggctcgtaccttgccgctacagtgaagcAagtcaagcctacaacgatac
                                -24         -12             +1                    		TGCCG TGGCTC [COMP-AINF]
[COMP-HINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[EXP-IEP] 		[1]
[2]
  actPp 4284935 actP 33 gatctcctttgttctcaccggtatctacatctggcgggcgaacggcgaattcgaccgtctTaataatgaagtcctgcatga
                                     -24        -12         +1                    		GGCGA TGGCGG [COMP-AINF]
[COMP-HINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[EXP-IEP] 		[1]
[2]
  argTp 2427849 hisP, hisM, hisQ, hisJ, argT 58 tatttaacgttgaatgttactgttgtcgtcaagatggcataagacctgcatgaaagagccTgcaaacacacaacacaatac
                                        -24        -12      +1                    		TGCAT TGGCAT [COMP-AINF]
[COMP-AINF-POSITIONAL-IDENTIFICATION]
[COMP-AINF-SIMILAR-TO-CONSENSUS] 		[3]
[1]
[4]
[5]
  aslBp 3982781 aslB 177 aaaaagcagtatttcggcgagtagcgcagcttggtagcgcaactggtttgggaccagtggGtcggaggttcgaatcctctc
                                -24         -12             +1                    		TGGTT TGGTAG [COMP-AINF]
[COMP-AINF-POSITIONAL-IDENTIFICATION]
[COMP-HINF]
[EXP-IEP] 		[1]
[2]
  astCp2 1832044 astE, astB, astD, astA, astC 62 tagcctccgccgtttatgcacttttatcactggctggcacgaaccctgcaatctacatttAcagcgcaaacattacttatt
                                        -24        -12      +1                    		TGCAA TGGCAC [COMP-AINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[COMP-HINF-SIMILAR-TO-CONSENSUS]
[EXP-IDA-RNA-POLYMERASE-FOOTPRINTING]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING] 		[6]
[1]
[7]
  atoDp 2323412 atoD, atoA, atoE, atoB 35 attagttaaataactaaatccaataatctcattctggcactccccttgctattgcctgacTgtacccacaacggtgtatgc
                                   -24         -12          +1                    		TGCTA TGGCAC [COMP-AINF]
[COMP-AINF-POSITIONAL-IDENTIFICATION]
[COMP-AINF-SIMILAR-TO-CONSENSUS]
[EXP-IMP] 		[1]
[8]
[4]
  chaCp 1272422 chaC 85 agttaaagctattcgtgcggtgttgccttgcaagtggtccgtggattgcatattgtcccgTtagtggtttcaaaatgagca
                                   -24         -12          +1                    		TGCAT TGGTCC [COMP-AINF]
[COMP-AINF-POSITIONAL-IDENTIFICATION]
[COMP-AINF-SIMILAR-TO-CONSENSUS]
[EXP-IEP] 		[1]
[4]
[9]
  dcuDp2 3374583 dcuD 286 acatcctatcacaggattgaaagtaggggaaaatggcagggttttctctttgtgcctcatCattaccataattaacggaat
                                  -24         -12           +1                    		CTCTT TGGCAG [COMP-AINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[COMP-HINF-SIMILAR-TO-CONSENSUS] 		[1]
[10]
  ddpXp1 1563107 ddpF, ddpD, ddpC, ddpB, ddpA, ddpX 31 ttaagccagcattctggcgcttatcccggcatggcatgagatctgcataagcggaaagcgCagcaatttttgtcttataca
                                     -24        -12         +1                    		TGCAT TGGCAT [COMP-AINF]
[COMP-AINF-POSITIONAL-IDENTIFICATION]
[COMP-AINF-SIMILAR-TO-CONSENSUS]
[COMP-HINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[EXP-IEP] 		[1]
[4]
[2]
  emrDp 3853845 emrD 77 catattctgccgctaaacaattccccattcctggcgtatatctggctaacattcatcaatGtgatagattcctctcccgca
                                -24         -12             +1                    		GGCTA TGGCGT [COMP-AINF]
[COMP-HINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[EXP-IEP] 		[1]
[2]
  fdhFp 4299407 fdhF 41 cccgtaatatcagggaatgaccccacataaaatgtggcataaaagatgcatactgtagtcGagagcgcgtatgcgtgattt
                                        -24        -12      +1                    		TGCAT TGGCAT [COMP-AINF]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING] 		[11]
[1]
[12]
  flhDp2 1978577 flhC, flhD 380 aacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaaTcggtggagctgcatgacaaa
                                     -24        -12         +1                    		CGCTG TGGGAC [COMP-AINF]
[COMP-HINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[EXP-IEP] 		[1]
[2]
  glmYp1 2691340 glmY 0 ataatcagtacgttaccaaactattttctttattggcacagttactgcataatagtaaccAgtggctcattcaccgactta
                                       -24        -12       +1                    		TGCAT TGGCAC [COMP-AINF]
[COMP-HINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[EXP-IDA]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
[EXP-IMP]
[RS-EPT-CBR] 		[1]
[13]
[14]
[15]
[16]
  glnAp2 4058107 glnG, glnL, glnA 73 gcatgataacgccttttaggggcaatttaaaagttggcacagatttcgctttatctttttTacggcgacacggccaaaata
                                        -24        -12      +1                    		CGCTT TGGCAC [COMP-AINF]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING] 		[1]
[17]
[18]
[19]
  glnHp2 848047 glnQ, glnP, glnH 43 gccgcatctcgaaaaatcaaggagttgcaaaactggcacgattttttcatatatgtgaatGtcacgcaggggatcgtcccg
                                       -24        -12       +1                    		TTCAT TGGCAC [COMP-AINF]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
[RS-EPT-CBR] 		[1]
[20]
[14]
  glnKp 472556 glnK, amtB 42 ttaacttcctgctctctttctcgtttttcatttctggcacaccgcttgcaataccttcttCgtgtagcagaaccattaccg
                                   -24         -12          +1                    		TGCAA TGGCAC [COMP-AINF]
[COMP-AINF-POSITIONAL-IDENTIFICATION]
[COMP-AINF-SIMILAR-TO-CONSENSUS]
[COMP-HINF-POSITIONAL-IDENTIFICATION] 		[1]
[4]
[21]
  glpQp 2351124 glpQ 113 ggtggcggcgagcgcgattgttggctacaccgtggacttcttcggctgggatggcggcttTatggtaatgattggcggcag
                                      -24        -12        +1                    		GCTGG TGGACT [COMP-AINF]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
[EXP-IEP-RNA-SEQ] 		[22]
  gltIp2 null gltL, gltK, gltJ, sroC, gltI       [COMP-AINF-POSITIONAL-IDENTIFICATION]
[COMP-AINF-SIMILAR-TO-CONSENSUS] 		[4]
  gnsAp1 1052004 gnsA 63 ataacctgttgattattgaatctttcggggagatggcttataacatttcttacctgaccaGggtaccgggaaccaacacct
                                  -24         -12           +1                    		TTTCT TGGCTT [COMP-AINF]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
[EXP-IEP-RNA-SEQ] 		[22]
  htpGp3 494817 htpG 303 tcggtccggatgatatcgggcttgatcgtctggaacagcgtctggcagaggaaaaaatcaCtgaagtgatcctcgccacca
                               -24          -12             +1                    		GGCAG TGGAAC [COMP-AINF]
[COMP-HINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[EXP-IEP] 		[1]
[2]
  hycAp 2850461 hycI, hycH, hycG, hycF, hycE, hycD, hycC, hycB, hycA 26 ttaaaaatctctttaataacaataaattaaaagttggcacaaaaaatgcttaaagctggcAtctctgttaaacgggtaacc
                                        -24        -12      +1                    		TGCTT TGGCAC [COMP-AINF]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
[RS-EPT-CBR] 		[1]
[23]
[14]
  hydNp 2838132 hypF, hydN 27 aattaatttccttaaataacagtaaattaaaaactggcatgatttgtgaatgtatcggcgCattaactgtcattgctggag
                                        -24        -12      +1                    		TGAAT TGGCAT [COMP-AINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[COMP-HINF-SIMILAR-TO-CONSENSUS]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING] 		[1]
[24]
  hyfAp 2601171 hyfA, hyfB, hyfC, hyfD, hyfE, hyfF, hyfG, hyfH, hyfI, hyfJ, hyfR, focB 30 cataacttattgaatatattgagttaatcagaatggcatcctttatgcaatatgaaatgcAatgtttcatatcattttcaa
                                  -24         -12           +1                    		TGCAA TGGCAT [COMP-AINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[COMP-HINF-SIMILAR-TO-CONSENSUS]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING] 		[1]
[25]
  hypAp 2850627 hypA, hypB, hypC, hypD, hypE, fhlA 20 catcgacattattcaccgcagggataatcaacactggcacaattattgcttgtagctggcAatagttaatgggaggcgata
                                   -24         -12          +1                    		TGCTT TGGCAC [COMP-AINF]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING] 		[1]
[26]
  ibpBp 3866981 ibpB 84 gcgaaaaaaccgcgccgtatcgaaatcaactaattccctaaggccgcctggcgcggcctgAcatctccatgctcgccgtca
                                               -24         -+1                    		GGCCT GGCCGC [COMP-AINF]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING] 		[1]
[27]
  nacp 2061978 nac 45 ttggttagcttgtacatcaacaccaaaataaaactggcaagcatcttgcaatctggttgtAagtaatggcggcacttgggc
                                        -24        -12      +1                    		TGCAA TGGCAA [COMP-AINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[COMP-HINF-SIMILAR-TO-CONSENSUS]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING] 		[1]
[28]
  nikAp2 3613439 nikA, nikB, nikC, nikD, nikE, nikR 228 agccatcgttaaacagcgtggcggcagcgcctggcaaatcgtcagcgtagacagcacctaTcactcctcgctgtcagtcag
                                -24         -12             +1                    		AGCGT TGGCAA [COMP-AINF]
[COMP-HINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[EXP-IEP] 		[1]
[2]
  norVp 2832439 norV, norW 37 ttatttatagagtaaaaacaatcagataaaaaactggcacgcaatctgcaattagcaagaCatctttttagaacacgctga
                                   -24         -12          +1                    		TGCAA TGGCAC [COMP-AINF]
[COMP-AINF-POSITIONAL-IDENTIFICATION]
[COMP-AINF-SIMILAR-TO-CONSENSUS]
[COMP-HINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
[EXP-IEP] 		[1]
[4]
[29]
[2]
  patAp2 3219458 patA 36 gtgtttatcccgattttcgcgatcgcagccggagtggcgcaatccctgcaatacttaaatCggtatcatgtgatacgcgag
                                   -24         -12          +1                    		TGCAA TGGCGC [COMP-AINF]
[COMP-AINF-POSITIONAL-IDENTIFICATION]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
[EXP-IEP] 		[1]
[30]
[31]
[32]
  potFp1 893736 potF, potG, potH, potI 48 gttctcttttcttacaccgcgccgataaaaaatatgcacgtttattgcatatctttcagtGtgacaacttttgttcgtttg
                                  -24         -12           +1                    		TGCAT ATGCAC [COMP-AINF]
[COMP-AINF-POSITIONAL-IDENTIFICATION]
[COMP-AINF-SIMILAR-TO-CONSENSUS] 		[1]
[4]
  prpBp 348646 prpB, prpC, prpD, prpE 36 tgaaattaaacatttaattttattaaggcaattgtggcacaccccttgctttgtctttatCaacgcaaataacaagttgat
                                   -24         -12          +1                    		TGCTT TGGCAC [COMP-AINF]
[COMP-AINF-POSITIONAL-IDENTIFICATION]
[COMP-AINF-SIMILAR-TO-CONSENSUS] 		[1]
[4]
  pspAp 1368038 pspA, pspB, pspC, pspD, pspE 41 aatcagatctttataaatcaaaaagataaaaaattggcacgcaaattgtattaacagttcAgcaggacaatcctgaacgca
                                   -24         -12          +1                    		TGTAT TGGCAC [COMP-AINF]
[COMP-AINF-POSITIONAL-IDENTIFICATION]
[COMP-HINF]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
[EXP-IMP]
[RS-EPT-CBR] 		[1]
[14]
[33]
  pspGp 4262816 pspG, pspH 24 gggcgttttgctgttaaatcaatagattatttttggcatgattcttgtaatgccagcaagAgatttcatatttgggagagc
                                  -24         -12           +1                    		TGTAA TGGCAT [COMP]
[COMP-AINF]
[EXP-IDA-RNA-POLYMERASE-FOOTPRINTING] 		[1]
[34]
  puuPp 1359373 puuP, ymjE 32 gtaatccagacatttcccggatgtcgcgttatggagcgcgggcggcaacgggcttccgttAacgattaagactgtgacgag
                                     -24        -12         +1                    		GGCAA TGGAGC [COMP-AINF]
[COMP-AINF-POSITIONAL-IDENTIFICATION]
[COMP-AINF-SIMILAR-TO-CONSENSUS]
[COMP-HINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[EXP-IEP] 		[1]
[4]
[2]
  radDp 2280622 radD 10 ctaataacatccctcaagggaaaaagatccatggcatactattagcagaataatctacctAcgcgagaccatgatttttac
                                -24         -12             +1                    		AGCAG TGGCAT [COMP-AINF]
[COMP-HINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[EXP-IEP] 		[1]
[2]
  relAp3 2913700 relA 49 tggatatgttcccacacacgggacatctggaatcgatggtacttttctcgcgcgttaaatAgttgcgatttgccgatttcg
 		    [COMP-HINF]
[EXP-IDA]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING] 		[35]
  relAp4 2914318 relA 667 ccgcaccgctaagttcggcagatcgcgaaaaactggaacgcttttcgcattctgaaggccTggatctgtatctcgcccccg
 		    [EXP-IDA]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING] 		[35]
  rhaDp 4094385 rhaD 113 gattgccggatgcggcacaagtgccttatcaggcctacaggtcggcaatagttgtaggccTgataagacgcgacagcgtcg
                                    -24         -12         +1                    		GGCAA AGGCCT [COMP-AINF]
[COMP-HINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[EXP-IEP] 		[1]
[2]
  rpoHp6 3600813 rpoH 30 aacagtgaatgataacctcgttgctcttaagctctggcacagttgttgctaccactgaagCgccagaagatatcgattgag
                                        -24        -12      +1                    		TGCTA TGGCAC [COMP-AINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[COMP-HINF-SIMILAR-TO-CONSENSUS]
[EXP-IDA]
[EXP-IDA-RNA-POLYMERASE-FOOTPRINTING]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
[EXP-IMP] 		[1]
[36]
[37]
[38]
[39]
  rseDp 2710339 rseC, rseB, rseA, rpoE, rseD 175 aacatggtttggtcagcatagcatcatgttgtgcggataaacacctgctattttaatattTgttacagttgctaaacacgc
                                       -24        -12       +1                    		TGCTA CGGATA [COMP-HINF]
[EXP-IDA]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
[EXP-IEP]
[EXP-IPI] 		[40]
  rtcBp 3558107 rtcA, rtcB 28 tgaattaaaaaattaagctgcttatttaattttctggcacgacggttgcaattatcaggaCagcaaacaacgaaaagagaa
                                        -24        -12      +1                    		TGCAA TGGCAC [COMP-AINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[COMP-HINF-SIMILAR-TO-CONSENSUS]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING] 		[41]
[1]
  rtcRp null rtcR       [COMP-HINF-POSITIONAL-IDENTIFICATION]
[COMP-HINF-SIMILAR-TO-CONSENSUS] 		[41]
  rutAp 1074026 rutG, rutF, rutE, rutD, rutC, rutB, rutA 15 aacagattaataacattaactttttaaaaactggcatccgctttgcaaacaagccaatacGcggctgaaaaggatatgcag
                                     -24        -12         +1                    		TGCAA TGGCAT [COMP-AINF]
[COMP-AINF-POSITIONAL-IDENTIFICATION]
[COMP-AINF-SIMILAR-TO-CONSENSUS]
[COMP-HINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[EXP-IEP] 		[1]
[4]
[2]
  xapBp3 2524375 xapB 390 taacgatgatcgttttggagagcgcttcttctcactggcaaatgcctacgatgcggaataCcgcgcactgttacaaaaagt
                                         -24        -12     +1                    		ACGAT TGGCAA [COMP-AINF]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
[EXP-IEP-RNA-SEQ] 		[22]
  xdhAp2 3000265 xdhA, xdhB, xdhC 80 cctacctcccctaacgcttatcgtcgtttctggcgtaaatcttgcctgcttagactaaatCtttgccataagaaccaaatg
                               -24         -12              +1                    		TGCCTG TGGCG [COMP-HINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
[EXP-IEP] 		[42]
[2]
  yaaUp 45592 yaaU 215 cacattgttgtgaaggccgatgctgataaacaggcgctggagctgctggtgaaagcgtgcCccgcaggtctgtacaagaag
                                      -24         -12       +1                    		TGAAA TGGAGC [COMP-AINF]
[COMP-HINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[EXP-IEP] 		[1]
[2]
  yahEp 335739 yahE 186 cagaccaaccatgtaggctggacgccgctactggaagcgattgtgcttaatgatggtggtAttaaacagcaggcgattgtg
                                -24         -12             +1                    		TGCTT TGGAAG [COMP-AINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[EXP-IEP] 		[1]
[2]
  yeaGp1 1866815 yeaG, yeaH 93 atcaccgggcacgttgttctcatcgtcgataaaatggcatgagagttgctgtgttttagcAagagacgtcgttcagtttac
                                   -24         -12          +1                    		TGCTG TGGCAT [COMP-AINF]
[COMP-AINF-POSITIONAL-IDENTIFICATION]
[COMP-AINF-SIMILAR-TO-CONSENSUS] 		[1]
[4]
  ygfKp 3015992 ygfK, ssnA 68 cctcacatttttttatatttcccgccaaacctggcaagagtggtgcgattgttgctctatCcccctaaaccaccggatttc
                                -24         -12             +1                    		TGCGA TGGCAA [COMP-AINF]
[COMP-HINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[EXP-IEP] 		[1]
[2]
  yhdWp 3418972 yhdW, yhdX, yhdY, yhdZ 70 cagcttattgcgacgcgaaatcgtgcgcaaaagctggcactacttttgcttataagaggaTggccacagacaggtaaaaga
 		    [COMP-AINF-POSITIONAL-IDENTIFICATION]
[COMP-AINF-SIMILAR-TO-CONSENSUS] 		[4]
  yhjCp 3672136 rcdB 278 aaaacaattttgaggatttccttatattggtggttagtacgcatgcaattaaaaatgaaaTtccgcgaccacaagccaaaa
                               -24          -12             +1                    		TGCAA TGGTTA [COMP-AINF]
[COMP-HINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[EXP-IEP] 		[1]
[2]
  zraPp 4201712 zraP 24 gccagattacccgtcatatcagcgtttcatcgttggcacggaagatgcaatacccgaagtAagacaaccactggaggatta
                                       -24        -12       +1                    		TGCAA TGGCAC [COMP-AINF]
[COMP-AINF-POSITIONAL-IDENTIFICATION]
[COMP-AINF-SIMILAR-TO-CONSENSUS]
[COMP-HINF-POSITIONAL-IDENTIFICATION] 		[1]
[43]
[4]
  zraSp 4201905 zraS, zraR 21 tgtgttacagcgcagggtaagcgctgataaaagatggcatgatttctgctgtcagaaaggGatgagcaggcaaagaagaag
                                   -24         -12          +1                    		TGCTG TGGCAT [COMP-AINF]
[COMP-AINF-POSITIONAL-IDENTIFICATION]
[COMP-AINF-SIMILAR-TO-CONSENSUS]
[COMP-HINF-POSITIONAL-IDENTIFICATION] 		[1]
[43]
[4]
Evidence: [COMP-AINF] Inferred computationally without human oversight
[COMP-HINF] Inferred by a human based on computational evidence
[COMP-HINF-POSITIONAL-IDENTIFICATION] Human inference of promoter position
[EXP-IEP] Inferred from expression pattern
[COMP-AINF-POSITIONAL-IDENTIFICATION] Automated inference of promoter position
[COMP-AINF-SIMILAR-TO-CONSENSUS] Automated inference based on similarity to consensus sequences
[COMP-HINF-SIMILAR-TO-CONSENSUS] A person inferred or reviewed a computer inference of sequence function based on similarity to a consensus sequence.
[EXP-IDA-RNA-POLYMERASE-FOOTPRINTING] RNA polymerase footprinting
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING] Transcription initiation mapping
[EXP-IMP] Inferred from mutant phenotype
[EXP-IDA] Inferred from direct assay
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates
[EXP-IEP-RNA-SEQ] RNA-seq evidence
[COMP] Inferred by computational analysis
[EXP-IPI] Inferred from physical interaction


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Zhao K., Liu M., Burgess RR., 2010, Promoter and regulon analysis of nitrogen assimilation factor, sigma54, reveal alternative strategy for E. coli MG1655 flagellar biosynthesis., Nucleic Acids Res 38(4):1273-83

 [3] Barrios H., Valderrama B., Morett E., 1999, Compilation and analysis of sigma(54)-dependent promoter sequences., Nucleic Acids Res 27(22):4305-13

 [4] Reitzer L., Schneider BL., 2001, Metabolic context and possible physiological themes of sigma(54)-dependent genes in Escherichia coli., Microbiol Mol Biol Rev 65(3):422-44, table of contents

 [5] Schmitz G., Durre P., Mullenbach G., Ames GF., 1987, Nitrogen regulation of transport operons: analysis of promoters argTr and dhuA., Mol Gen Genet 209(2):403-7

 [6] Fraley CD., Kim JH., McCann MP., Matin A., 1998, The Escherichia coli starvation gene cstC is involved in amino acid catabolism., J Bacteriol 180(16):4287-90

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RegulonDB